Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2844 ATGAATTTTCAGCAAGACAAATTTGTTAGATTTCGGGATTGGAACTCAGACAAGGGTTCTGAGAGCAACTCTCCTGCAATTCACATAACACGCTCGGGGACAATGAGGAATACACTAAATTCAGTTTCTGAAGAGTTTCAGAGGGGTTTGGAATCTAGTTTGGAGGGGATAAAGAGATTTAGAAGATCATTCAAATCTCTTCCTTATAACAGAGTTCTTGCTAGAAGTTTTAGTTCTGGGAAGAAAATCCTTGATCCACAGGGCCCTTTCCTTCAAAAGTGGAATAAGATATTTGTATTATCGTGCCTTATTGCTGTATCACTTGATCCTTTGTTCTTTTATGTTCCTGTGATTGATGATAACAAGAAATGTCTTTCACTGGACAGAAAAATGGAAATTACAGCAACTGTTTTAAGATCTTTctctgatattttttatataatccaTATAATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGGGTATTTGGAAGAGGTGTTTTGGTTGAAGATGCTTGGGCAATAGCAATGCGGTATCTATCATCATACTTCTTAATTGACATTCTTGCCGTTCTTCCCCTCCCACAGGTGGCAATTCTAATTATCATTCCAAAGTTGAGAGGCTCTTTATCGTTGAATACGAAGACCTTGCTGAAATTTATCGTCTTCTTCCAATATATCCCACGGTTTTTACGAATAATTCCATTATATAAAGAAGTAACTAGGACCTCAGGAATTCTCACTGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCTTTCTGTACATGCTAGCAAGTCATGTTATTGGCGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACATGCTGGCAAGATGCATGTCGAAGAAATAGCACATGTAACACAGCAGATATGTATTGTGATCCTGAAGGTTCTGACACAATTTCAGCATTCCTGAATGCTTCTTGCCCCATACAGGATCAAAATACAACACTCTTTAATTTTGGAATATTTCTTGATGCCCTTCAATCTGGAGTTGTGGAGTCAAGAGATTTCCCACAAAAGTTCTTTTATTGTTTCTGGTGGGGCCTAAGAAATTTGAGTTCTCTTGGTCAGAACCTTGCTACAAGTACCTATGTTTGGGAAATCTGCTTtgcaattttcatttcaattgcTGGTTTGGTATTATTTGCATTCCTCATTGGAAATATGCAGaCATATTTGCAGTCAACAACTACCAGATTGGAGGAAATGAGGGTGAAAAGGAGAGATGCAGAGCAGTGGATGTCTCATCGATTACTCCCTGACAGCCTGAGAGAAAGAATCAGACGACATGAGCAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACAGTTTGGTTCGAGATCTTCCCAAGGATTTAAGAAGGGATATTAAGAGGCATCTTTGCTTGGCTTTGCTGATGAGGGTGCCAATGTTTGAGAAAATGGATGACCAACTTTTGGATGCAATGTGTGACCGACTCAAGCCAGTGCTATACACAGAAGAAAGCTGCATTGTCCGGGAAGGAGATCCTGTTGATGAGATGCTCTTCATAATGCGAGGCAAGCTATTGACGGTGACCACTAATGCCTGGAGGCGCTATAGTAAAAAGAAGCTGGAAGAGTCTCTCAGGGAAGAGGAGAATAGGCTGCAAGATGCATTGGCCAAAGCAGGTGGTAGTTCACCTAGTCTAGGTGCCACAATATATGCTTCAAGATTTGCAGCTAATGCACTTAGACTTTTACGTAGAAATAGCACAAGGAAGACCAGGGTGCCAGAGAGAATATCACCCATGATGCTGCAGAAGCCTGCTGAGCCTGATTTTACTTCTGAAGAGCAATAG 1863 0.3994 MNFQQDKFVRFRDWNSDKGSESNSPAIHITRSGTMRNTLNSVSEEFQRGLESSLEGIKRFRRSFKSLPYNRVLARSFSSGKKILDPQGPFLQKWNKIFVLSCLIAVSLDPLFFYVPVIDDNKKCLSLDRKMEITATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFGRGVLVEDAWAIAMRYLSSYFLIDILAVLPLPQVAILIIIPKLRGSLSLNTKTLLKFIVFFQYIPRFLRIIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVIGAFWYLFSIERETTCWQDACRRNSTCNTADMYCDPEGSDTISAFLNASCPIQDQNTTLFNFGIFLDALQSGVVESRDFPQKFFYCFWWGLRNLSSLGQNLATSTYVWEICFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDSLVRDLPKDLRRDIKRHLCLALLMRVPMFEKMDDQLLDAMCDRLKPVLYTEESCIVREGDPVDEMLFIMRGKLLTVTTNAWRRYSKKKLEESLREEENRLQDALAKAGGSSPSLGATIYASRFAANALRLLRRNSTRKTRVPERISPMMLQKPAEPDFTSEEQ 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2844 620 ProSiteProfiles cAMP/cGMP binding motif profile. 485 530 IPR000595 -
Ssu1g2844 620 Pfam Ion transport protein 94 412 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu1g2844 620 SUPERFAMILY Voltage-gated potassium channels 85 407 - -
Ssu1g2844 620 MobiDBLite consensus disorder prediction 595 620 - -
Ssu1g2844 620 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 536 618 - -
Ssu1g2844 620 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 6 536 - -
Ssu1g2844 620 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 536 618 - -
Ssu1g2844 620 Gene3D Helix hairpin bin 411 476 - -
Ssu1g2844 620 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 536 - -
Ssu1g2844 620 SUPERFAMILY cAMP-binding domain-like 414 534 IPR018490 -
Ssu1g2844 620 Coils Coil 543 563 - -
Ssu1g2844 620 Gene3D - 96 409 - -
Ssu1g2844 620 Gene3D Jelly Rolls 483 570 IPR014710 -
Ssu1g2844 620 CDD CAP_ED 485 530 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2844 Ssu-Chr1 75324893 75333118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2844 537 619 Ion Channels AT5G53130 78.824 2.88e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2844 K05391 - gmx:100817516 1028.47