Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2837 ATGATAATAGTCCACCATTCCATTTACCCAAACCCAAAAGTCAACAGCACTCTTTCCCAATTCCCAAAGATGAAGATCCCCAATCCCATACTGGCTCTTCTGACACACCTGGCAGTGGTAGCACTAGCAAGCATAGAAACATGCTTGGACAGTGTTTGCCACCTGAAGGAGCCAGTAATCCGATTCCCGTTCCACGTAGAGGGAAAGCACGCAGAGGCATGTGGATACCCAGGGTTCACAGTATCCTGCAGCGAGAACGGCCAAACACTGCTGAACCTCCCAAACTGGGGCGAGCTCAAAATCCAAGGAATAAACTACGCCGAGCAGCAACTATGGGTGAACGACCCCAATAACTGCCTCCCCAAACGCCTTCTCTCTCTCAACCTCTCCGCCTCTCCATTCGACGCCGTTTACCACCAGGAATTCGCCTTCTTCAACTGCTCCTTCAACTTGGAGTACCTCTCCCGTCGCTACCGCCCCATAAACTGCCTCAGCCACTCTTCCGAGTACGTCGTTTTCGCAACACCTTCGCCGACCGCGTTTGGGCGCTTCTCGTCCGTCTGCGATTTCGTGGAGACGGTGAAGGTGCCCGTGCAGTCGCCGTTTTACGACCACGTGCTGTCGTCTGACCTCAGCGACGATCTCCGACTCTCGTGGGATTCGCCGCCGTGCGGGAGGTGCGAGTCCCGCGGTGGCCGATGCGGCTTCAAGAGCAACGAAACCTTTGAGCTCGACTGTTCCCGTGTCCCTTCAAAAGGGATGTCCCGTGGTGCACGGTACGCCATGGCCATATGCGTAGGGGTACCGGCTGTGCTGTGCTCGATTGGAGTATTGAGTTGCATCTGCAGCTGGTTAAGGATCGGGACCCACGATTGGCCTTGGGCTCATGAAACGGTGGCAGATTTTGAGCCTCTAGCTAGCTCACGCCCCACCACAGTCTCGGGCCTCGATAGGCCCACAATTGAATCGTACCCAAAAATAGTTATAGGTGAGAGCAGACGCTTACCCAAGAAGGGCGACAAGACCTGCTCAATATGCCTGTCGGAGTACATGCCCAAAGAGACGGTGAAAACCATACCTGAATGTGGACACTGCTTTCATGCACAATGCATCGATGAATGGCTTCCACTGAACGCGTCGTGCCCAATTTGCCGAACTTCTCCCCCAAAGTTACCACAACCGCGTGCTCGATCATGA 1197 0.5447 MIIVHHSIYPNPKVNSTLSQFPKMKIPNPILALLTHLAVVALASIETCLDSVCHLKEPVIRFPFHVEGKHAEACGYPGFTVSCSENGQTLLNLPNWGELKIQGINYAEQQLWVNDPNNCLPKRLLSLNLSASPFDAVYHQEFAFFNCSFNLEYLSRRYRPINCLSHSSEYVVFATPSPTAFGRFSSVCDFVETVKVPVQSPFYDHVLSSDLSDDLRLSWDSPPCGRCESRGGRCGFKSNETFELDCSRVPSKGMSRGARYAMAICVGVPAVLCSIGVLSCICSWLRIGTHDWPWAHETVADFEPLASSRPTTVSGLDRPTIESYPKIVIGESRRLPKKGDKTCSICLSEYMPKETVKTIPECGHCFHAQCIDEWLPLNASCPICRTSPPKLPQPRARS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2837 398 Pfam Wall-associated receptor kinase galacturonan-binding 48 115 IPR025287 GO:0030247
Ssu1g2837 398 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 37 395 - -
Ssu1g2837 398 Pfam Wall-associated receptor kinase C-terminal 183 246 IPR032872 -
Ssu1g2837 398 ProSiteProfiles Zinc finger RING-type profile. 343 385 IPR001841 -
Ssu1g2837 398 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 37 395 - -
Ssu1g2837 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 390 IPR013083 -
Ssu1g2837 398 SUPERFAMILY RING/U-box 337 389 - -
Ssu1g2837 398 Pfam Ring finger domain 342 385 IPR001841 -
Ssu1g2837 398 SMART ring_2 343 384 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2837 Ssu-Chr1 75225438 75228056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2837 46 388 C3H Transcription Factor Family AT2G46495 37.356 2.59e-66 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2837 - - gmx:100818969 593.964