Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2831 ATGGAGCCTGCTTTGGGTATTCTAAGTATTCcatcaaattcttttgtgaagATTTGTGTTATTTGCAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCCGGTTATCGAATGGAGTTGCATTGTTTGGAGAAAAATGGCAGGCAGACAACAAAGATGGTCTCTTATTGTGCTTACCACAGGGCTCCCAATCCAGATACTGTTTTGATTATGCAAACCCCTCTTGGGGTCATATCAACCAAAAGCCTTCTCCAAACTAAGAAAAAAACTGGTTCGAGGTTAATCTCATCTAACAGAAGAAAGCAAGATGACCCTCCTGTTGATAACACTGAGCATGAGCCATTTTCTGCTGCTAGGTGCCGTATATTTCAAAGAACAAACCATACCAAAAAGAGAGCAGCAGATGAAGCCATTTCTCATCGAGTGGGGGGTCACTATCATCATCCTTTAGATGCAATACAAAGTTTAAATACACCCAGAGTGGTACGTGAACCTCagtcattttcttcttttagagAACGCCTTTACCACTTGCAGAGAACTGAAAACGAACGGGTTTGCTTTGGTAGATCGGGCATACATGGATGGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTGAGACGCAGCATTGCAGATCTGAGGGAGGCGCGCTATAGATTTGAAGGGAAAGACTGCTACCTGTTTAAAATTAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAATATAGCACGACTGATTAATCATTCTTGTATGCCAAACTGCTATGCGAGGATCATGAGTGTGGGGGACGACGAGAGCCGAATTGTACTCATTGCTAAGACTAACGTGTCTGCTGGTGATGAGCTAAcGTATGACTACTTGTTTGATCCTGACGAGCCTGATGAATTCAAAGTCCCCTGCCTATGTAAAGCTCCAAACTGCCGGAAATTCATGAATTAG 1020 0.4157 MEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKTGSRLISSNRRKQDDPPVDNTEHEPFSAARCRIFQRTNHTKKRAADEAISHRVGGHYHHPLDAIQSLNTPRVVREPQSFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRFEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2831 339 SMART PostSET_3 323 339 IPR003616 -
Ssu1g2831 339 MobiDBLite consensus disorder prediction 109 123 - -
Ssu1g2831 339 ProSiteProfiles Extended PHD (ePHD) domain profile. 1 74 IPR034732 -
Ssu1g2831 339 PANTHER PHD FINGER PROTEINS 1 339 - -
Ssu1g2831 339 Pfam SET domain 208 313 IPR001214 GO:0005515
Ssu1g2831 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 76 IPR013083 -
Ssu1g2831 339 Pfam PHD-like zinc-binding domain 2 74 - -
Ssu1g2831 339 MobiDBLite consensus disorder prediction 102 125 - -
Ssu1g2831 339 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 339 - -
Ssu1g2831 339 SUPERFAMILY SET domain 190 336 IPR046341 -
Ssu1g2831 339 CDD SET_SETD1-like 184 335 - -
Ssu1g2831 339 ProSiteProfiles SET domain profile. 197 314 IPR001214 GO:0005515
Ssu1g2831 339 ProSiteProfiles Post-SET domain profile. 323 339 IPR003616 -
Ssu1g2831 339 SMART set_7 197 320 IPR001214 GO:0005515
Ssu1g2831 339 Gene3D SET domain 91 339 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2831 Ssu-Chr1 75093559 75098106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2831 203 339 C2H2 Transcription Factor Family AT2G23740 36.129 4.17e-16 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu1g2831 SET 3.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2831 - - gmx:100811337 664.07