Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2830 ATGATTATCAAGCGGAACCTGAAATCCCAAATGCCGAGTCTGAAACGGGTCAAACTCGGTGACTCGGCGGGCGAGGACGAGGAGTGTTCCTACGCTCGAAAGAAGAGAAAGACCAACGGTTACTACCCTTTGAACCTTCTCGGCGACGTGGCCGCCGGCATAATCCCGGTGAGTTTTCACGGGCTGCTCGGCGCGGGCGTGTCGGAGAAGGGGTTCTCTGCGGCGTGGTGCACCAAGGTGTCGTGCAGCAACGAAGTGGAATCAAACGCGAAAAACGACGTCGTGGAAGTGAAGAAGAAGAACGAGGTTCAGCGGCCACCGTTGGTTCGGACTTCGAGAGGGCGGGTTCAGGTTCTCCCTTCGCGGTTCAACGACTCGGTTATTGATAATTGGAGGAAGGAGAGCAAGGGTGGCGGTGGCTTACGTGATTGTGATTATGAAGAAGAATTTGAGTGCAAGAAGGAGAAGTTCGGGTTGAGGCCACCCAAGGAGAAGAAAGGGCGAAACGAGGAGAAAGCGGGTTCTAAGCCTCGCAAGGACTCGGCATTGTGTAAGAGTTTTGAGAGGAGCAAGTGTTCTAGTTTGCGTGGTGGTGCATTGGCTTTGAGGCGTGGGGTGGTGGTTGAAGAGGGTGAGAGGGGAAGGTTTTTGGAGGTGGAAGGGGTTGGTTTGATGGGTTTGAAAGAGAATGGGGAGAAGAGGAATGGGTTGTTTGGGCCAGAAGATTTTTATGCAGGTGATATAGTGTGGGCCAAAGCTGGGAGAAAGGAACCTTTTTGGCCAGCCATTGTTATTGATCCTATGTCTCAGGCACCTGAGTTGGTTCTCAGGTCTTGTATAGCTGATGCAGCTTGTGTCATGTTTCTTGGGTATGCGGGGAATGAGAATCAAAGGGACTATGCATGGGTGAAGCATGGGATGATTTTTCCATTTATGGATTATGTGGACAGGTTTCAGGGGCAGTCTGAGTTGAGTTTCTACAATCCTTCTGATTTCCAAATGGCAATAGAGGAAGCATTTTTGGCGGAGAGGGGTTTCACAGAGAAGTTGATAGCAGATATAAATACAGCAGCTGGGAACAATGGTTATGATGATTCTATTCTGAAATCCTTTCAGGAGGTCAGGGGTTCAAACCAGTATGCAGGATATCATTTTCTGAACCAAGATTTATTTGATAAGAAAGAGACTCGGCCCTGTGAAGCCTGTGGATTGAGCCTTGCTTACAAGAtgttaaagaaaacaaaggatTCAAGGCCTGGTGGCCAATTCCTATGTAGAACATGTGCTAGGTTAACAAAATCAAAGCATTATTGTGGCATATGCAAGAAGGTTTGGAATCATTCAGATAGTGGAAGTTGGGTGCGCTGTGATGGATGCAAAGTGTGGGTGCATGCAGAATGTGACAAAATTTCTAGCAACCTTTTCAAGaatCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAGAAATCACAGCCAAAAGTCAAGTGGAACAAAAACAATGGGCAGCTAGTGCTTCCAAATAATGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCCAGCCTTCATTTAGTTGTGTGCAAGTGTGGGTTTTGTGGGACAGAAAAACAAGCACTTAGTGAATGGGAACGACACACAGGTTCCAAATTGAGAAATTGGAGAACAAGTATCAGGGTGAAAGACTCCATGCTACCTCTGGAACAATGGATGCTGCAGTTGGCAGAATTTCATGCTACTGCCCAAGTTTCTGCCAAACCCAAGAAACCTTctctaaaagaaagaaagcagaAATTGCTCACCTTCTTGCAAGAGAAGTACGAACCTGTTTATGCTAAGTGGACTACAGAACGCTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACtacaacaaaattatcatttgcaACAGaTGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTCCGAGACTTTACATCTTGGGTTTGTAAGGCTTGCGAAACACCTGAAATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAGGTGGTGCTCTAA 2088 0.454 MIIKRNLKSQMPSLKRVKLGDSAGEDEECSYARKKRKTNGYYPLNLLGDVAAGIIPVSFHGLLGAGVSEKGFSAAWCTKVSCSNEVESNAKNDVVEVKKKNEVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKGGGGLRDCDYEEEFECKKEKFGLRPPKEKKGRNEEKAGSKPRKDSALCKSFERSKCSSLRGGALALRRGVVVEEGERGRFLEVEGVGLMGLKENGEKRNGLFGPEDFYAGDIVWAKAGRKEPFWPAIVIDPMSQAPELVLRSCIADAACVMFLGYAGNENQRDYAWVKHGMIFPFMDYVDRFQGQSELSFYNPSDFQMAIEEAFLAERGFTEKLIADINTAAGNNGYDDSILKSFQEVRGSNQYAGYHFLNQDLFDKKETRPCEACGLSLAYKMLKKTKDSRPGGQFLCRTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLEGTDYYCPTCKAKFDFELSDSEKSQPKVKWNKNNGQLVLPNNVTVLCNGVEGIYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKLRNWRTSIRVKDSMLPLEQWMLQLAEFHATAQVSAKPKKPSLKERKQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPEIKRECCLCPVKVVL 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2830 695 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 431 493 IPR013083 -
Ssu1g2830 695 Pfam PHD-finger 437 490 IPR019787 -
Ssu1g2830 695 ProSitePatterns Zinc finger PHD-type signature. 632 677 IPR019786 -
Ssu1g2830 695 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 684 - -
Ssu1g2830 695 CDD PHD_TCF19_like 438 488 - -
Ssu1g2830 695 ProSiteProfiles Zinc finger PHD-type profile. 629 680 IPR019787 -
Ssu1g2830 695 SUPERFAMILY Tudor/PWWP/MBT 237 345 - -
Ssu1g2830 695 SMART PHD_3 631 678 IPR001965 -
Ssu1g2830 695 SMART PHD_3 437 489 IPR001965 -
Ssu1g2830 695 PANTHER PHD FINGER PROTEINS 1 684 - -
Ssu1g2830 695 Pfam PHD-finger 644 678 - -
Ssu1g2830 695 CDD PHD_ATX3_4_5_like 631 677 IPR042011 -
Ssu1g2830 695 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 682 IPR013083 -
Ssu1g2830 695 SUPERFAMILY FYVE/PHD zinc finger 435 492 IPR011011 -
Ssu1g2830 695 SUPERFAMILY FYVE/PHD zinc finger 602 678 IPR011011 -
Ssu1g2830 695 Gene3D - 240 346 - -
Ssu1g2830 695 MobiDBLite consensus disorder prediction 160 180 - -
Ssu1g2830 695 ProSiteProfiles Zinc finger PHD-type profile. 435 491 IPR019787 -
Ssu1g2830 695 ProSiteProfiles PWWP domain profile. 245 314 IPR000313 -
Ssu1g2830 695 Pfam PWWP domain 246 340 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2830 Ssu-Chr1 75088136 75093475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2830 394 462 EF-hand Containing Proteins AT5G28340 49.275 1.57e-15 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu1g2830 PWWP 4.1e-12 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2830 - - gmx:100808761 1273.46