Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2828 ATGTATGCAGAAACTGGTCTTCTCTTCCCATACTTGCATAACCTCTCTCAAGAGCTTCATCAGCTTGAGGAGTACTGCAAAACCCAGAAGTCCAATGCTTCAATGGAAGACCTTGTTCAGTCTTCTGCCATGTCAGAGTATGATTTGGCAGCGGAGGGAGATCTGTTCAAAGCTCCTGAACCTATTATTGAAGAGCCAATCATGGACCTGGATCCCATGACAGCGGCCATCTCGATGATATCTTGTGGGGAAGATGTCTCCTCACAGGGATTAAAATCCGCTGATATTGATATTCTTCAAAATGATCAGTTTCTGAGTGAGGTATTCTACGAATGCAAAAAGGATCTCTTAGAAAAGGCAGCAATAGAGTCACCACTCTCTGAGATTCTGGAAATCAAGGTTCCTCTTCTGAACATTGATGAGAACTCAATTCAAGAAGACAAGCCACTTCCTGACATTCAATTAGCAAAGAGTGTCAGCTCAGGAAGTTTGAGCTCAATGGACTGGATGCGTGGAGCTGCAATGAAGCCTGCTTTCATTGATATCCCTTCAATAGATTTCGATGCAGTTTTTGGCATGCGGAGAGCATATAGTGAAGGAGATATAAAGACTCTTGGTAATGGTAACATGAACATCGTCCAATCACCTCATGAGAGGCCCTTTCTTATCAGCAACTGCACCAGTGAGGAACGCTTACAAAAGCTCTCCAGATACAGGAATAAGAGGACAAAGAGGAATTTTGGGAGGAAAATCAAGTATGCTTGCAGGAAGGCTCTTGCTGACAGTCAGCCAAGAATCCGTGGAAGATTTGCAAGGACTGAAGAATCTGACGGCAAGAGGGAATGA 846 0.4385 MYAETGLLFPYLHNLSQELHQLEEYCKTQKSNASMEDLVQSSAMSEYDLAAEGDLFKAPEPIIEEPIMDLDPMTAAISMISCGEDVSSQGLKSADIDILQNDQFLSEVFYECKKDLLEKAAIESPLSEILEIKVPLLNIDENSIQEDKPLPDIQLAKSVSSGSLSSMDWMRGAAMKPAFIDIPSIDFDAVFGMRRAYSEGDIKTLGNGNMNIVQSPHERPFLISNCTSEERLQKLSRYRNKRTKRNFGRKIKYACRKALADSQPRIRGRFARTEESDGKRE 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2828 281 ProSiteProfiles CCT domain profile. 231 273 IPR010402 GO:0005515
Ssu1g2828 281 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 27 278 - -
Ssu1g2828 281 Coils Coil 12 32 - -
Ssu1g2828 281 Pfam CCT motif 231 273 IPR010402 GO:0005515
Ssu1g2828 281 PANTHER CCT MOTIF FAMILY PROTEIN 27 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2828 Ssu-Chr1 75068446 75073324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2828 227 277 C2C2-CO-like Transcription Factor Family AT5G57660 49.020 2.32e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu1g2828 CCT 1.7e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2828 - - gmx:100814332 500.745