Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2824 ATGGAGTACGGAAGATTGGGACCCTCTGATCCTGGTGGCTCCTCGCGCCACATTGCTCCTTCGGTTAACCGAAGATCCTCCGGTAAGAAGAAGATTATCTTGCTGTCACTCTTCGCCGTCGTATTAATCGTCGCTGCCGCCGTCACCGCCACGGTCGTTCGCTCCCGCACTGAAAGCGCGGATTCCAACGGGCCTGGGCTCAGCGGGAGGCCCACGCAGGCGATTTCGCGCACGTGCAGCAAAACGCGGTTCCCGACGCTGTGCGTAAACTCGCTCGTGGACTTCCCGGGATCCGCGACGGCGTCGGAGAAGGACCTCGTCCACATTTCCTTCAACGTGACGCTGCAGCACCTCTCGAAGGCGCTCTACTCCTCCGCCGCGATCTCCTACGCCGCCATGGACCCCCGCCTCCGCTCCGCCTACGACGACTGCCTGGAGCTCCTCGACGACTCCGTCGACGCGCTCGCCCGCTCCCTCAACACCGTCTCCGCCGGCGCCGTAGGCTCCGCCAACGACGACGTGCTGACGTGGCTCAGCGCCGCGCTCACCAACCAGGACACCTGCGCGGAGGGCTTCGCCGACGCCGCCGCCGGCCCCGTCAAGGACCGGATGGCCGACAACCTCAAGGACTTGTCGGAGCTCGTGAGTAACTGTCTCGCGATATTCGCCTCCGCCGGCGCCGGAGACGACTTCGCCGGTGTTCCCATTCAGAATAGGAGGCGGCTGATGGCAATGCGAGACGATGGTTTCCCGAAATGGTTGAATCGGCGAGATAGGAGGTTGCTGGGCTTGCCTCTTTCGGCGGTGCAAGCGGATATTGTGGTTTCCAAGGATGGTAATGGAACCGTTAAGACCATCGCCGAGGCCATTAAGAAGGTGCCGGATTATGGTTCGCGGCGCTTCATTATCTACGTCAGGGCAGGAAGGTATGAAGAGGACAATTTAAAGGTGGGGAGGAAGAAAACAAGTGTGATGTTCATAGGAGACGGGAAGGGCAAGACCGTCATCACGGGcggaaaaaattataaggagaACCTGACCACGTTTCACACCGCATCCTTCGGTAAATTCTTTCTCTTTGTCCTCTACTTAATGCTTGTTACTGTGTTTTCATCAATTTAG 1122 0.5838 MEYGRLGPSDPGGSSRHIAPSVNRRSSGKKKIILLSLFAVVLIVAAAVTATVVRSRTESADSNGPGLSGRPTQAISRTCSKTRFPTLCVNSLVDFPGSATASEKDLVHISFNVTLQHLSKALYSSAAISYAAMDPRLRSAYDDCLELLDDSVDALARSLNTVSAGAVGSANDDVLTWLSAALTNQDTCAEGFADAAAGPVKDRMADNLKDLSELVSNCLAIFASAGAGDDFAGVPIQNRRRLMAMRDDGFPKWLNRRDRRLLGLPLSAVQADIVVSKDGNGTVKTIAEAIKKVPDYGSRRFIIYVRAGRYEEDNLKVGRKKTSVMFIGDGKGKTVITGGKNYKENLTTFHTASFGKFFLFVLYLMLVTVFSSI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2824 373 PANTHER PECTINESTERASE 22 355 - -
Ssu1g2824 373 Pfam Plant invertase/pectin methylesterase inhibitor 74 221 IPR006501 GO:0004857
Ssu1g2824 373 CDD PMEI-like_3 79 223 - -
Ssu1g2824 373 TIGRFAM PME_inhib: pectinesterase inhibitor domain 55 223 IPR006501 GO:0004857
Ssu1g2824 373 Gene3D Invertase/pectin methylesterase inhibitor family protein 72 224 IPR035513 -
Ssu1g2824 373 SMART PMEI_2 70 221 IPR006501 GO:0004857
Ssu1g2824 373 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g2824 373 PANTHER PECTINESTERASE 22 355 - -
Ssu1g2824 373 SUPERFAMILY Pectin lyase-like 267 354 IPR011050 -
Ssu1g2824 373 Pfam Pectinesterase 272 355 IPR000070 GO:0030599|GO:0042545
Ssu1g2824 373 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 73 222 IPR035513 -
Ssu1g2824 373 Gene3D - 266 358 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2824 Ssu-Chr1 74895787 74897959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2824 1 354 Carbohydrate Esterase AT5G53370 55.956 1.35e-137 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2824 - - gmx:100808236 522.702