Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2819 ATGGCATCGACGAGGATGAGATCCACACCAACCATCATCACTCTGAGTTTTCTTCCACAAAGCCTCGCAATGGAGGcactaataacaataattctatGGGCGCCACCGCCATTGCCCCAGGCAACCAGCGTCCACGAGTTGCTGGAATGCCCTGTATGTACTAATTCAATGTACCCTCCAATTCATCAGTGTCACAACGGCCACACGCTGTGTTCCACGTGTAAAACAAGGGTGCACAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGACATTAGGTGTCTGGCACTGGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTACTACTCCTTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGTAATTTTAGACCATATAGTTGTCCTTATGCTGGATCGGAATGTTCTGTTGTCGGGGATATTCCTTTCCTTGTTGCTCATTTGAGGGACGATCATAAAGTGGACATGCACACAGGATGCACATTCAACCATCGATATGTGAAGTCAAATCCCCGTGAAGTAGAGAATGCAACCTGGATGCTCACAGTATTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCATTCCAGCTTGGCATGGCCCCTGTATACATGGCATTCCTTCGTTTTATGGGTGATGAGAATGAGGCTCGGAATTATAGCTATAGCCTAGAGGTTGGGGCCAATGGCAGGAAACTTATTTGGGAGGGTACACCACGAAGTGTTCGGGATAGCCACCGTAAAGTTAGGGATAGCCATGATGGGCTCATTATTCAAAGAAATATGGCCCTTTTTTTCTCTGGTGGGGACAGAAAAGAGCTGAAACTCAGAGTTACAGGAAGAATATGGAAGGAACAACAGAATTCGGATGCTGGGGTGTGCATGCCAAATCTCTGTAGTTGA 939 0.4537 MASTRMRSTPTIITLSFLPQSLAMEALITIILWAPPPLPQATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSFGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNSDAGVCMPNLCS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2819 312 CDD RING-HC_SIAHs 48 86 - -
Ssu1g2819 312 ProSiteProfiles Zinc finger SIAH-type profile. 103 163 IPR013010 GO:0008270
Ssu1g2819 312 Pfam Seven in absentia protein family 92 291 IPR018121 GO:0005737|GO:0006511|GO:0007275
Ssu1g2819 312 ProSiteProfiles Zinc finger RING-type profile. 50 86 IPR001841 -
Ssu1g2819 312 SUPERFAMILY RING/U-box 44 90 - -
Ssu1g2819 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 156 IPR013083 -
Ssu1g2819 312 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 33 303 - -
Ssu1g2819 312 SUPERFAMILY TRAF domain-like 103 295 - -
Ssu1g2819 312 PANTHER OS05G0238200 PROTEIN 33 303 - -
Ssu1g2819 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 92 IPR013083 -
Ssu1g2819 312 CDD Sina 164 292 - -
Ssu1g2819 312 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 157 291 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2819 Ssu-Chr1 74805491 74808341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2819 41 298 C3H Transcription Factor Family AT2G41980 81.008 2.97e-163 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2819 K04506 - vvi:100252009 581.252