Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2814 ATGGGGAAGAAAGGAGGGAGCTGGTTCTCGTCAGTGAAGAGAGTTTTTAAGTCGTCTTCTAAGGACTCACCGGCGCGGGAGAAGAAGAAAGTCAACAACGAAGAGCAATGGCAGCATGAAGCGCCAGAGGAGGTGTCTGTGGAGCATTTTCCTGAACAGAGTTCTCCAGATGTCACCAATGAGGGAAGTGCCACGTCAACACCAGTGACAGAAGATAGAAATCATGCCATTGCCTTTGCAGCGGCAACTGCGGCCGCTGCTGAAGCTGCGGTGGCGGCTGCTCAAGCAGCCGCTAGAGTTGTCAGATTGGCAGGTTATGGACGCCAATCCAAGGAAGAAAGAGCTGCAACACTCATTCAATCATATTACAGAGGCTACCTTGCTCGACGTGCACTGCGTGCTTTGAAGGGATTGGTTCGGCTGCAAGCGCTTGTGAGGGGACATAATGTGCGAAAGCAAGCGCAGATGACAATGCGATGCATGCATGCGTTAGTCCGAGTCCAGGCAAGAGTAAGAGCTCGCAGACTCCAGTTGACACAGGAGAAGCTTCAGAGAAGACTCGAGGAGCAGGTCCAAAGAGAGCTAGAGGAACAAGAACCTAAGCTTTTGAGACCCATCAAAATGTTAGATATGGATGGTTGGGACAGTAGGCGCCAAAGTAGCCAGcaaattaaggaaaatgattTGAGAAAACATGAAGCTGTAATGAAGAGGGAGAGAGCTCTTGCTTACGCTTTCAACTGCCAGCAACAGCAGAAGCAGTACATGCACATAGAGCcagatgatgatgatattggAAGCTATATCAACGAGCGTGAAAGAGCCCAATTGGATTGGAACTGGTTGGAACGTTGGATGTCATCACAATCACATAACTTAAGGCACCTGGGGCCACGTGAGACCCTTTATGGGACTACTACAGCTACTACTGCCACTGATGAAATGTCTGAAGAAAAGACTGTTGAAATGGACATGAGTGCAACTCTGGACTCAGCTCATGTTAATATGGGCATTGTTAACCAAGAATCTTTTGACACAAGCCCAATCTCCAATAGGTACCACCAGAGACATCGTAGTGCAGGTGGACCTAGCTACATGGCCCCAACCCAGTCTGCAAAGGCCAAGGTTCGGTGTCAAGGCCAGTTTAAGCAACGGGGTTCGCCTGGGCCTCAATGGAACTCATCCACGAGGAGAAGTTCTCCTATTGGGTTGGGCTGTGACTCATCTAGCTCTGGTGGGGCCACTGCAGCTCATGTGTTCCCAAGGAGCCCAAACCCAAAAATTAATGAGATTCGCCTCCAATCTAGACGGATTTCAACCGGCAGCCCAGATAATGTTGGCATTGAAGATTGGGCCCTTCCCCTTGGAGCCAATGGTTGGGCTTga 1386 0.4877 MGKKGGSWFSSVKRVFKSSSKDSPAREKKKVNNEEQWQHEAPEEVSVEHFPEQSSPDVTNEGSATSTPVTEDRNHAIAFAAATAAAAEAAVAAAQAAARVVRLAGYGRQSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMHALVRVQARVRARRLQLTQEKLQRRLEEQVQRELEEQEPKLLRPIKMLDMDGWDSRRQSSQQIKENDLRKHEAVMKRERALAYAFNCQQQQKQYMHIEPDDDDIGSYINERERAQLDWNWLERWMSSQSHNLRHLGPRETLYGTTTATTATDEMSEEKTVEMDMSATLDSAHVNMGIVNQESFDTSPISNRYHQRHRSAGGPSYMAPTQSAKAKVRCQGQFKQRGSPGPQWNSSTRRSSPIGLGCDSSSSGGATAAHVFPRSPNPKINEIRLQSRRISTGSPDNVGIEDWALPLGANGWA 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2814 461 ProSiteProfiles IQ motif profile. 136 163 IPR000048 GO:0005515
Ssu1g2814 461 MobiDBLite consensus disorder prediction 16 69 - -
Ssu1g2814 461 MobiDBLite consensus disorder prediction 384 416 - -
Ssu1g2814 461 Gene3D - 109 160 - -
Ssu1g2814 461 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
Ssu1g2814 461 PANTHER IQ-DOMAIN 21 1 435 - -
Ssu1g2814 461 SMART iq_5 111 133 IPR000048 GO:0005515
Ssu1g2814 461 SMART iq_5 134 155 IPR000048 GO:0005515
Ssu1g2814 461 MobiDBLite consensus disorder prediction 19 47 - -
Ssu1g2814 461 MobiDBLite consensus disorder prediction 52 69 - -
Ssu1g2814 461 Pfam Protein of unknown function (DUF4005) 347 413 IPR025064 -
Ssu1g2814 461 MobiDBLite consensus disorder prediction 382 426 - -
Ssu1g2814 461 Coils Coil 173 193 - -
Ssu1g2814 461 PANTHER IQ-DOMAIN 5-RELATED 1 435 - -
Ssu1g2814 461 Pfam IQ calmodulin-binding motif 113 133 IPR000048 GO:0005515
Ssu1g2814 461 Pfam IQ calmodulin-binding motif 139 154 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2814 Ssu-Chr1 74748986 74752539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2814 1 451 IQD Protein Family AT3G49260 49.896 1.05e-100 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2814 - - gmx:100808965 658.677