Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2808 ATGGGCTTTATCTCCGAACATGATTTCCCCAATTTTGAGATCATTCCTCATGGCTTCGACTCATGGTTTTACGAGACAGACGAAATCATGGAGATTTCACCATTAGAGGGTTTTTCCGAGCACGATTGGACACAGCAGTTGCCATATTCAAGCAAGCAACTTTGCTTCAATGAGTTCCCTGATATTGAAAATTTCAACTTCGATTTTAGCCTCCCACCCCTCGGTGAAtatttggaggaccaaaagcCCTTGAACATTGCTGTGCCCGAAAGGGGGCATTGCAATCGTGAGAGGGGTTTTGGGGATGATTTAGTTGCGATTGAAAAAGGGTTTGCGAGTTGTGTGAAGAAAGAGGTGGAGAATCATGCGAGGCCATTGCCATTGCCATTGCCTAGTAGCAGTAGGAAGAACAAGAGGTCGAGTGCGTTGGAATTTGACGAGATCAAGAACCATTTTAATGTTCCCATAACCGAAGCCGCAAAGCAAATGAATGTGGGGTTAACCCTGTTGAAGAGAAGGTGCAGGGAGCTCAACATCATGAGGTGGCCTCATAGGAAACTCAAGAGCTTGCAGTTACTCATCGACAATGTTAAGGAATTGGGTTTGGCAAATGAGGTTGCCATGTTGGAGAAGCACAAAATGACGTTGGAAAGATTACCAGGATTGGAACTGAGCGAGGAAACCAAGAAGCTGAGGCAGGCTTGTTTCAAAGCTAATTACAAGAGGAGAAGGTGTTTGGCACTCCAAGCTTGA 753 0.4422 MGFISEHDFPNFEIIPHGFDSWFYETDEIMEISPLEGFSEHDWTQQLPYSSKQLCFNEFPDIENFNFDFSLPPLGEYLEDQKPLNIAVPERGHCNRERGFGDDLVAIEKGFASCVKKEVENHARPLPLPLPSSSRKNKRSSALEFDEIKNHFNVPITEAAKQMNVGLTLLKRRCRELNIMRWPHRKLKSLQLLIDNVKELGLANEVAMLEKHKMTLERLPGLELSEETKKLRQACFKANYKRRRCLALQA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2808 250 Pfam RWP-RK domain 143 190 IPR003035 -
Ssu1g2808 250 ProSiteProfiles RWP-RK domain profile. 126 211 IPR003035 -
Ssu1g2808 250 PANTHER PROTEIN RKD4 132 245 IPR044607 GO:0003700
Ssu1g2808 250 PANTHER PROTEIN RKD4 132 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2808 Ssu-Chr1 74661123 74662795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2808 143 247 AtRKD Transcription Factor Family AT5G53040 62.857 7.61e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ssu1g2808 RWP-RK 4.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2808 - - pvu:PHAVU_009G051600g 347.436