Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2786 ATGGCAAACGCAGTATTAGTTCGCGCTTCACTTGCCCCAGCATCTGAGTTACTTTCCCGGatcatttttactatatttgACACTGTCAAAGCAGCCAATGAGGTTGTCATTCACAAGGAAAATTTTAGGAGATTTTCTATTCACTTGGAGAATATCTCATCTATATTgaagtttttatcaaatgaaGACATGCACAACCCCGAGAGCTTGAAAAATGCTATGGATGGTCTCAACCGAGAGGTTGAACTTGCCAAGCAGCTGGTTGTTGAGTGCAACAGTAGAAGTAAGGTTTATCTTTTAATCAATTCCAGAAAGATCGTTACACGCTTGAATTGTTGTACCAAGGCTATAGGTCGGGCAGTAAGCCTCATCCCTCTGGCATCTTTAGACATTACCTCTGTTTTAAATCAACAGATAATTGAGTTATGTCAGAAAATGTTAGATGCTGAGTATCAAACATCTGCAGCAGATGaggaaattttagaaaaaattgagaCAGCAATACAAGAGGGAAATGTTGATCGGTCATACGCGAATCAGTTGCTAACCTGTATTGCAGATGCAATTGGGGTCCCCATGGAGCATTGTGCTTTGAAGAGAGAATTTGAAgagctgaaaaatgaaatggaaaatgCCAAGTCAAGGATAGATGTGGCAGAAACTCTACATATGGAGCAGATTGTTGCAGTGCTTGGAAAGGCTGATTTTATAACTTCAGCACAAGAGAAGGAAACTAAGTACTTTGAGAAAAGATATTCCTTGGGAGAGAGACCATTGATGGCTCTGCAGTCTTTTTACTGCCCAATCTCTCATGATATTATGGTGGACCCCGTGGAGACTTCCTCTGGGAAGACATATGAGAGAAGTGCAATAGAGAAGTGGTTTGCTGAAGGGAACACTCTCTGTCCCTTGACCAGGTTGCCTCTGGATACTAAAGTCCTAAGGCCAAATAAAACTCTTAGACAGTCTATTCAAGAATGGAAGGACAGGAACACAATGATTGCCATTTCTACCATCAAATCCGAACTTGAAACGAATGAAGAAGACGGGGTGATTATTCAATCCTTAGACAAATTACAGGACCTATGCTTAGAAAGAGAGGTGCATCGAGAATGGTTAAAACTGGAGAATTACATCACTGTTCTTGTTGGACTTCTTAGTTCTAAAAATCGTGAAATAAGAAGGCGTGTTCTACTCATCCTGTCTATGCTTGCAATGGATAATGCAGAGAATAAGGAAGATATTGCTAAAGTGGATAACGCACTTGGAGCAATTGTTCGCTCACTTTCACGTCAAGCTGAGGAACGCAAGTTGGCATTGGAGTTGCTGTTGGGGTTGTCTAAAAGTAAAATGGTGTGCAGTCTCATAGGAAACATTCAAGGAAGCATACTTCTCCTGGTAACAATGTTAAATAGTGATGATGTTGAAGCAGCCGAAAATGCACATGAGCTGCTGGAGAACCTCTCTTTCCTTGATCAGAATGTTATAGAGATGGCAAAGGCAAATTATCTTAAGCCTTTACTACTGAAACTTTCTACAGGACcggaaaatatgaaaatagtcATGACTGAAACTTTGTCCGAAATTACATTGACCGACCAGAATAAATTGTCCTTGGTCAAAGATGGGGCATTGCAACCTCTTCTTCAGCTGCTCTTAAATAATGATGTGGAAATCAAGAAAGTGGCTGTGAAAGCTCTACTACAGCTCTCAAGCTTGCCGGAGAATGGCCTGCAGATGATTAAGGAAGGCGTTGCTCAACCACTGTTGGAACTGCTATACTGTCACAGTTTACAGTCACCTATTCTGCTTGAACAGGTTGTTGCCACTATAATGCATCTTGCCATATCAACAACTCACCAACAAGCTGAAGCAGAACAGGTTTCATTGTTAGATTCTGAGGAAGACATATTCAAATTCTTCTCTCTAATTTCTTTGACGGAACCTGAGATACAAAACAAGATTCTCAAAACTTTCCAGGCATTGTGCCGATCTTTCTATGGCTCCCGTGTCAGAAAGAGGTTGAGACAGATCTCAGCAGCTAAAGTATTGGTCCACTTGTTGGAGCTTAATACCCAAGCAGTGCAGGTCAATGCCTTGAAGCTTTTCTATTGCTTGACAGAAGGCGGTGATTATGGCAACATCTCATCACATATAACTGAAAGATTCATTAAAGTCTTGCTTACCATCATTGAGGCTTCTAATGACGCAGAAGAGATGGTTACTGCTATGGGTATCATCTCTAAACTACCACAGGAATCTCACATGACCCAGTGGCTTTTAGATTCTGGGGCACTTAAAACTATCTTGACTTGTCTCACCGATCAACATAAGCATGCCTCACACAAAATGCAAGTCATAGAGAATTCTGTTCAAGCTCTTTGTCGGTTTACAGTCTCAACAAATCAGGAGTGGCAGAAGAGAGTGGCTTTAGAAGGCACAATCCCAGTGCTAGTGCAATTGCTGCTTTCTGGGACACCctttacaaaacaaaatgcaGCCATTTCAATCAAGCAGTTTTCAGAAAGTTCATATTGCTTGAGCGAGCCGATAAAGAAGACGGGCATTTTCAAATGCTGCCTTGTAGCCCAAGAAACTGGTTGCCCTGCACACCTGGGCACCTGCTCAGTTGAGTCTTCATTCTGCATTTTGCAAGCTAATGCCTTGGAGCCCCTTGTGCGCATGCTTGCAGAGCAAGATGTTGGAACTCGCGAGGCTTCCTTAGATGCGCTACTAACTTTGATTAATGGTGAAACACCACAAAGTGGAAGTAAGGTACTTGCAGATTCAAATGCTATTACACCAATGATACAGCTATTGAGTGTTCAGGCTCCAAGGTTGCAGGAAAAAATTCTAATAGCTTTAGAACGAATTTTTCAACTGGATGAAGTGAGAAATAAGTACAAAAATGTGGCCACAATGCCCTTGGTAGACATAACTCAGGGGAAAGATAGCCGTTTGAGAAGTCTTGCTGCCAAAGGCCTTGCTCAATTGGGTGTACTTGATAAACAGTCTTCTTATTTTTGA 3027 0.404 MANAVLVRASLAPASELLSRIIFTIFDTVKAANEVVIHKENFRRFSIHLENISSILKFLSNEDMHNPESLKNAMDGLNREVELAKQLVVECNSRSKVYLLINSRKIVTRLNCCTKAIGRAVSLIPLASLDITSVLNQQIIELCQKMLDAEYQTSAADEEILEKIETAIQEGNVDRSYANQLLTCIADAIGVPMEHCALKREFEELKNEMENAKSRIDVAETLHMEQIVAVLGKADFITSAQEKETKYFEKRYSLGERPLMALQSFYCPISHDIMVDPVETSSGKTYERSAIEKWFAEGNTLCPLTRLPLDTKVLRPNKTLRQSIQEWKDRNTMIAISTIKSELETNEEDGVIIQSLDKLQDLCLEREVHREWLKLENYITVLVGLLSSKNREIRRRVLLILSMLAMDNAENKEDIAKVDNALGAIVRSLSRQAEERKLALELLLGLSKSKMVCSLIGNIQGSILLLVTMLNSDDVEAAENAHELLENLSFLDQNVIEMAKANYLKPLLLKLSTGPENMKIVMTETLSEITLTDQNKLSLVKDGALQPLLQLLLNNDVEIKKVAVKALLQLSSLPENGLQMIKEGVAQPLLELLYCHSLQSPILLEQVVATIMHLAISTTHQQAEAEQVSLLDSEEDIFKFFSLISLTEPEIQNKILKTFQALCRSFYGSRVRKRLRQISAAKVLVHLLELNTQAVQVNALKLFYCLTEGGDYGNISSHITERFIKVLLTIIEASNDAEEMVTAMGIISKLPQESHMTQWLLDSGALKTILTCLTDQHKHASHKMQVIENSVQALCRFTVSTNQEWQKRVALEGTIPVLVQLLLSGTPFTKQNAAISIKQFSESSYCLSEPIKKTGIFKCCLVAQETGCPAHLGTCSVESSFCILQANALEPLVRMLAEQDVGTREASLDALLTLINGETPQSGSKVLADSNAITPMIQLLSVQAPRLQEKILIALERIFQLDEVRNKYKNVATMPLVDITQGKDSRLRSLAAKGLAQLGVLDKQSSYF 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2786 1008 Gene3D - 14 128 IPR036537 GO:0007166
Ssu1g2786 1008 CDD RING-Ubox_PUB 265 306 IPR045210 -
Ssu1g2786 1008 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Ssu1g2786 1008 Gene3D - 436 628 IPR011989 -
Ssu1g2786 1008 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Ssu1g2786 1008 SUPERFAMILY ARM repeat 784 1000 IPR016024 -
Ssu1g2786 1008 Pfam MCAfunc domain 29 145 IPR045766 -
Ssu1g2786 1008 Gene3D - 338 433 IPR011989 -
Ssu1g2786 1008 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 585 IPR000225 GO:0005515
Ssu1g2786 1008 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1008 - -
Ssu1g2786 1008 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Ssu1g2786 1008 SUPERFAMILY RING/U-box 258 333 - -
Ssu1g2786 1008 Pfam Armadillo/beta-catenin-like repeat 533 571 IPR000225 GO:0005515
Ssu1g2786 1008 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 9 1008 - -
Ssu1g2786 1008 Gene3D - 866 1003 IPR011989 -
Ssu1g2786 1008 SMART arm_5 802 842 IPR000225 GO:0005515
Ssu1g2786 1008 SMART arm_5 876 916 IPR000225 GO:0005515
Ssu1g2786 1008 SMART arm_5 753 799 IPR000225 GO:0005515
Ssu1g2786 1008 SMART arm_5 491 531 IPR000225 GO:0005515
Ssu1g2786 1008 SMART arm_5 573 616 IPR000225 GO:0005515
Ssu1g2786 1008 SMART arm_5 920 960 IPR000225 GO:0005515
Ssu1g2786 1008 SMART arm_5 532 572 IPR000225 GO:0005515
Ssu1g2786 1008 SUPERFAMILY ARM repeat 52 667 IPR016024 -
Ssu1g2786 1008 SUPERFAMILY ARM repeat 514 858 IPR016024 -
Ssu1g2786 1008 Coils Coil 195 222 - -
Ssu1g2786 1008 Gene3D - 647 863 IPR011989 -
Ssu1g2786 1008 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 337 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2786 Ssu-Chr1 74273519 74278051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2786 263 1008 U-box Gene Family AT1G76390 27.612 3.98e-60 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2786 - - gmx:100818273 1641.32