Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2778 atgGGAGGTTCATCGGAGACGAAGTTCCTGCAAGACCTGTTGCTGTACGCGGCGAGCGCGGCGCTGAGTTGCTTGGTGTTGTTTGCGGGGCTCAGACACCTTGACCCCAATCGCGAAGCGTCGAAGAAGGCTCTCGAGCACAAGAAAGAGATTGCCAAGCGTCTCGGTCGCCCCCTCATTCAGACAAACCCTTATGAGGATGTTATAGCCTGTGATGTTATAAATCCTGACCACATTGATGTGGAGTTCAACTCTATTGGGGGCCTGGAAACAATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTACCTCTAAAAAGACCTGACTTGTTTTCACACGGTAAGCTTCTTGGACCACAAAAAGGGGTCCTGCTGTATGGACCACCTGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCTAAGGAGTCGGGAGCAGTTTTTATCAATGTGAGGATATCAAACCTGATGAGCAAGTGGTTTGGGGATGCCCAAAAGCTTGTGGCTGCTGTATTTAGCTTGGCTTATAAGCTTCAGCCTGCCATCATTTTCATCGATGAAGTAGACAGTTTTTTGGGTCAGCGTCGTACAACAGATCATGAGGCTTTGCTAAACATGAAAACTGAGTTCATGGCTCTGTGGGATGGATTTACCACGGATCaGAATGCTCGAGTTATGGTCCTTGCAGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGGCGTCTTCCTCAAGCCTTTGAAATTGGAATTCCAGACCAAAGGGAGAGGAGTGAAATATTGAAGGTTATCTTAAAGGGTGAGAGGGTTGAAGACAACATAGACTTTCGTCATGTAGCTGGCTTGTGTGAGGGTTACACAGGTTCAGATCTATTTGATCTTTGCAAGAAAGCTGCCTATTTTCCTGTTAGAGAACTACTGGATGAAGAGAAGAAAGGGAAACGATCTCCTGCACCTAGACCTTTGTCCCAGTTAGATTTGGAGATGGCTATTGCCACCTCACAGAAGACAAAAGTTGCTGCAAGTGAATATGGTGGATTCAGCCTTCAGTCACCTTCTAGATGGACAGCACCTGGTGAGTCAGGTGATTCTCAGATTCAAGCTGCAAtcaatgaattttctaagcttgtGGTTTCTCACATGATTAACCTCCAATCAGATTCCCAGGATCCTTAA 1179 0.4529 MGGSSETKFLQDLLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFNSIGGLETIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERSEILKVILKGERVEDNIDFRHVAGLCEGYTGSDLFDLCKKAAYFPVRELLDEEKKGKRSPAPRPLSQLDLEMAIATSQKTKVAASEYGGFSLQSPSRWTAPGESGDSQIQAAINEFSKLVVSHMINLQSDSQDP 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2778 392 CDD AAA 116 251 - -
Ssu1g2778 392 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Ssu1g2778 392 Pfam AAA+ lid domain 274 310 IPR041569 -
Ssu1g2778 392 Gene3D - 80 337 IPR027417 -
Ssu1g2778 392 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 3 376 - -
Ssu1g2778 392 SMART AAA_5 118 254 IPR003593 -
Ssu1g2778 392 Gene3D - 253 333 - -
Ssu1g2778 392 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Ssu1g2778 392 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 3 376 - -
Ssu1g2778 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2778 Ssu-Chr1 74157177 74164577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2778 39 318 Calmodulin-binding Proteins AT3G56690 32.746 2.49e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2778 K22530 - gmx:100796908 731.865