Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2771 ATGGAAGAACTCACCAACAATTGGTCTCCAAACCCACAAGCACTTGAAGCTCCATTATTAGGGccaagaaaggaaaagaaaatgaagtgtatcacaaggagggggaaaagGAAATATAACCAGGATAAGACGATCTGCCGCAAGTGTTATGCACGTTTACACCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCagTTGAGGCCAAAGAAGAAGATCAAGTAA 237 0.3586 MEELTNNWSPNPQALEAPLLGPRKEKKMKCITRRGKRKYNQDKTICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2771 78 SMART Ribosomal_L40e_3 27 78 IPR001975 GO:0003735|GO:0005840|GO:0006412
Ssu1g2771 78 Gene3D - 32 78 IPR038587 -
Ssu1g2771 78 MobiDBLite consensus disorder prediction 1 21 - -
Ssu1g2771 78 PANTHER UBIQUITIN 36 75 - -
Ssu1g2771 78 SUPERFAMILY Zn-binding ribosomal proteins 37 77 IPR011332 GO:0006412
Ssu1g2771 78 Pfam Ribosomal L40e family 37 77 IPR001975 GO:0003735|GO:0005840|GO:0006412
Ssu1g2771 78 PANTHER UBIQUITIN-60S RIBOSOMAL PROTEIN L40 36 75 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2771 37 78 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.619 3.68e-25 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2771 K02927 - zju:107416326 95.9005