Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2769 ATGATGGAGGGAGAAGAGAATATTCAAGCATCAAAGGGAAAAAATGTTGAAAGCTTCACCTGCTTGGAGGCaccaaggaagaaaaacaagaagatAGAAAACAAGAGGAGGTTTAGTGATGAACAGATTAGATCACTAGAATGCATATTTGAGTCAGAATCAAAGCTTGAGCCAAGGAAGAAGATGCAACTGGCGAGAGATCTTGGCCTGCAGCCTCGCCAAGTGGCCATATGGTTCCAAAACAGAAGGGCAAGGTGGAAATCAAAACGCATAGAGCAAGAATACAGGAAACTCAAAGATGAATATGACAATTTAGCATCAAGGTTTGAGTCCctaaagaaagagaaggagtCTTTGCAATTAGAGTTGCAGAAGCAAAGTGATTTGGTGGTAACATCTCATGACGGTGAAAGGGAAGACAAGGTTGCCAAAGAAAACAGCATAGAAGATGGTGGTTCGGGCAGTGGATACAGCAGTTGGAAGCCTGAAGCAAAACCAAGGTTTTCAAATGAGGCTTTGGAGGACAGAATAGGTGTGTATTCAGATGATCAAAATGAGAATAGCATCATAAGGAGTGAGAAATCTGAGGACAAAGGACAGCAACTTCTCAGAATGGATGATCATGCAGAGATGCCATTAGCGTCTCTTGAAAAATGGTATAGTGGTGTGGACCCTAGTGGCATCTTAGACCAGTCATGTAGCAGTTCTCAATGGCTAGATTTCTGGACTTGA 732 0.403 MMEGEENIQASKGKNVESFTCLEAPRKKNKKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKKEKESLQLELQKQSDLVVTSHDGEREDKVAKENSIEDGGSGSGYSSWKPEAKPRFSNEALEDRIGVYSDDQNENSIIRSEKSEDKGQQLLRMDDHAEMPLASLEKWYSGVDPSGILDQSCSSSQWLDFWT 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2769 243 SUPERFAMILY Homeodomain-like 24 89 IPR009057 -
Ssu1g2769 243 Gene3D - 24 98 - -
Ssu1g2769 243 MobiDBLite consensus disorder prediction 130 165 - -
Ssu1g2769 243 CDD homeodomain 35 90 IPR001356 GO:0003677
Ssu1g2769 243 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Ssu1g2769 243 Coils Coil 81 129 - -
Ssu1g2769 243 MobiDBLite consensus disorder prediction 131 147 - -
Ssu1g2769 243 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Ssu1g2769 243 Pfam Homeodomain 35 87 IPR001356 GO:0003677
Ssu1g2769 243 SMART HOX_1 32 93 IPR001356 GO:0003677
Ssu1g2769 243 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 243 IPR045224 GO:0003700
Ssu1g2769 243 PRINTS Lambda-repressor HTH signature 60 69 IPR000047 GO:0003677
Ssu1g2769 243 PRINTS Lambda-repressor HTH signature 69 85 IPR000047 GO:0003677
Ssu1g2769 243 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 243 - -
Ssu1g2769 243 Pfam Homeobox associated leucine zipper 89 125 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2769 Ssu-Chr1 74038260 74039093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2769 1 243 Homeobox Transcription Factor Family AT2G46680 41.860 8.36e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu1g2769 Homeodomain 2.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2769 K09338 - gmx:100499926 407.527