Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2767 atgGGGATCCTTGGCGATCATCATGATAATCAGAAACATCATCACCACCACATGAGCTTCCACCTGCACATTCCTCACCTCCACTTTCATCACCACCACGAGAAGAAGGATCTGAAGGACATCCCAAAAGGGTGTTTGGCAATCTTGGTGGGCCAAGGGGAGGAGCAACAGAGGTTTGTGATCCCTGTGATTTACATGAACCACCCACTGTTCATGCAGTTGCTGAAAGAAGCTGAAGAGGAATACGGGTTCGATCAGAAAGGCCCCATCACCATTCCATGCCACGTGGAGCAGTTCCGCACCGTCCAAGGCTTGATTGATAGGGAGAAATGTCTCCACCATCATCATGCTTGGTGCTTTAAAGTTTGA 369 0.4878 MGILGDHHDNQKHHHHHMSFHLHIPHLHFHHHHEKKDLKDIPKGCLAILVGQGEEQQRFVIPVIYMNHPLFMQLLKEAEEEYGFDQKGPITIPCHVEQFRTVQGLIDREKCLHHHHAWCFKV 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2767 122 Pfam Auxin responsive protein 35 102 IPR003676 GO:0009733
Ssu1g2767 122 PANTHER SAUR-LIKE AUXIN-RESPONSIVE FAMILY PROTEIN 18 116 - -
Ssu1g2767 122 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 18 116 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2767 Ssu-Chr1 73991962 73992330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2767 40 100 Calmodulin-binding Proteins AT5G20810 57.377 3.20e-19 77.0