LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g2766	ATGGGGCATTGCTGCAGCAAAAACATCGCCGTCAACAACGAGACGGTGGCCGCCGATCACGGCCCCAAGCCGCCGCATTACGCGCCGGCATCGCCGCCGCCGACGTCGGGGGGCTCAGTCTCCGGCGCGACGCCGGGGAGGGGCACGCCGGCGCACTCGTTTTCGACGAGTCCGTTCCCGAGCCCGCTCCCGCCGGGCGTGGCGCCGTCGCCGGCAAAGACGCCTGGGAGGAAGTTCCGGTGGCCGCTGCCTCCGCCGTCGCCGGCGAAGCCGATCATGGCGGCGCTGCTGCGGCGGCAGGGGAAGGCGAAGCCGAAGGAGGGGCCGATACCGGAGGAGCAAGGGGAGGGCGGGGAGGGAGAGAGGTCGCTGGATAAGAGCTTCGGTTATGGGAAGAATTTTGGGGCAAAGTTCGAGTTGGGGAAGGAAGTGGGTCGAGGGCATTTTGGTCACACTTGTTGGGCCAAAGGGAAGAAGGGTGACCTTAAGGGACAATCCGTTGCTGTGAAAATCATATCCAAAGCTAAGATGACTTCAGCGATAGCAATTGAAGATGTACGGAGGGAGGTGCAAATGTTGAAGGCCTTATCAGGACATAAGAATTTGGTCAAGTTTTATGATGCATTTGAGGATGTCAACAACATCTACATTGTTATGGAGTTGTGTGAGGGTGGAGAATTACTTGACAGAATTCTAGATAGagGTGGAAGATACCCAGAGGATGATGCTAAAGCTATTCTTGTACAAATTCTAGATGTAGTTGCGTTTTGTCATCTTCAAGGAGTTGTTCATCGTGATCTAAAACCAGAGaattttctttttgtctcaAAAGACGAGGATGCAGTGATGAAAGTTATTGATTTTGGGCTATCTGATTTTGTTAGGCCAGATCGACGCCTCAATGACATTGTTGGCAGTGCCTATTACGTTGCACCTGAAGTGCTCCATAGATCTTACAGTGTTGAAGGAGACTTATGGAGTATTGGAGTTATATCATACATATTGTTATGCGGAAGTAGACCATTTTGGGCACGCACTGAATCAGGGATTTTCCGGTCTGTGTTAAGAGCGAATCCTAACTTTGATGATTCACCTTGGCCATCAATATCACCAGAAGCTAAAGACTTTGTGAAGCGACTTCTGAACAAGGATCACAGGAAAAGGATGACTGCTGCTCAAGCGTTAGCTCACCCATggttgagaaatgaaaaaattgctATTCCTTTAGATATTTTGATTTACAAGTTAGTAAAGTCATACGTGTGTGCCTCACCTTTGAGACGTGCGGCATTGAAGGCTCTTGCGAAAGCATTGACAGAAGACGAGCTAATCTATCTTAGAGCACAGTTTAGCCTCTTGGAGCCTAAAGATGGCTGCATTTCGCTTGAGAATTTTAGAGTTGCTCTCATGAAAAATGCAACTGATGCCATGAAGGAATCAAGGGTCCCTGACATTCTAAATTTGATGGAGCCACTCTCCCAGAAAAAAATGGATTTCGAAGAGTTTTGCGCTGCTGCAATCAGTGTATACCAGCTGGAAGTTCATCAAGAATGGGATAGAATTGCTACCACAGCTTTTGAGTATTTTGAGGAGGCAGGAAACCGAGTCATTTCAGTTGAGGAGTTGGCTCAGGAGATGAATTTGGGTCCATCAGCTTACTCTTTAATGGGTGATTGGATCAGAAAATCTGATGGAAAACTCAGCTTGGTCGGATATACAAAGTTTTTGCATGGTGTGACAATGCGTAGTTCAAATACAAGACACCGACAGCTAGTATAA	1779	0.4761	MGHCCSKNIAVNNETVAADHGPKPPHYAPASPPPTSGGSVSGATPGRGTPAHSFSTSPFPSPLPPGVAPSPAKTPGRKFRWPLPPPSPAKPIMAALLRRQGKAKPKEGPIPEEQGEGGEGERSLDKSFGYGKNFGAKFELGKEVGRGHFGHTCWAKGKKGDLKGQSVAVKIISKAKMTSAIAIEDVRREVQMLKALSGHKNLVKFYDAFEDVNNIYIVMELCEGGELLDRILDRGGRYPEDDAKAILVQILDVVAFCHLQGVVHRDLKPENFLFVSKDEDAVMKVIDFGLSDFVRPDRRLNDIVGSAYYVAPEVLHRSYSVEGDLWSIGVISYILLCGSRPFWARTESGIFRSVLRANPNFDDSPWPSISPEAKDFVKRLLNKDHRKRMTAAQALAHPWLRNEKIAIPLDILIYKLVKSYVCASPLRRAALKALAKALTEDELIYLRAQFSLLEPKDGCISLENFRVALMKNATDAMKESRVPDILNLMEPLSQKKMDFEEFCAAAISVYQLEVHQEWDRIATTAFEYFEEAGNRVISVEELAQEMNLGPSAYSLMGDWIRKSDGKLSLVGYTKFLHGVTMRSSNTRHRQLV	592

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g2766	592	Gene3D	-	439	507	-	-
	Ssu1g2766	592	PANTHER	SERINE/THREONINE-PROTEIN KINASE	51	583	-	-
	Ssu1g2766	592	Gene3D	-	418	549	-	-
	Ssu1g2766	592	MobiDBLite	consensus disorder prediction	15	123	-	-
	Ssu1g2766	592	PANTHER	CDPK-RELATED KINASE 3-LIKE ISOFORM X1	51	583	-	-
	Ssu1g2766	592	ProSiteProfiles	Protein kinase domain profile.	138	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu1g2766	592	Gene3D	Phosphorylase Kinase; domain 1	132	227	-	-
	Ssu1g2766	592	SUPERFAMILY	Protein kinase-like (PK-like)	137	418	IPR011009	-
	Ssu1g2766	592	Gene3D	Transferase(Phosphotransferase) domain 1	228	411	-	-
	Ssu1g2766	592	ProSitePatterns	Protein kinases ATP-binding region signature.	144	170	IPR017441	GO:0005524
	Ssu1g2766	592	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	262	274	IPR008271	GO:0004672\|GO:0006468
	Ssu1g2766	592	CDD	STKc_CAMK	137	399	-	-
	Ssu1g2766	592	SUPERFAMILY	EF-hand	432	577	IPR011992	-
	Ssu1g2766	592	MobiDBLite	consensus disorder prediction	34	56	-	-
	Ssu1g2766	592	MobiDBLite	consensus disorder prediction	57	71	-	-
	Ssu1g2766	592	Pfam	Protein kinase domain	138	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu1g2766	592	MobiDBLite	consensus disorder prediction	100	123	-	-
	Ssu1g2766	592	SMART	serkin_6	138	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g2766	Ssu-Chr1	73981672	73988302	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g2766	1	583	EF-hand Containing Proteins	AT3G50530	57.030	0.0	707

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Ssu1g2766		Pkinase	2.4e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g2766	-		-	gmx:100803631	1044.26