Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2761 ATGGGTGAATTTGGCGTTTCACACAAGGAAGCTACGGGAAAGAGAAGGAGCAGTAGTAGCGTTCTTGGGTTGGATGCGAAGGTGCAGGGCCCTGAAGCATTCCATAATAAGATGACGATGATGCTGCATCATAATCATCACCACCGTCCATTGTCATCACCCTTTGATAATGATTCCTGTGCCGGTGATGGCGATGGTCCCACGACTTACATGTCTTTTACTAATCATATAAACCTTGTTAGTGGTGCTTCTGTTCTCGGTCCTGCTATTGATGGTGGCTGTGGTGCTGCATCTGCACCTGTAAGAACTTTGCAGCCTTTTGACATTTCTCCTTATACTtctcccaccaccaccaccaccttcaaATCCTCagCAGGTGGGATGGCGGCTTCGTTGGGGTTTCCTTTCACAAGTGCACAATGGAAGGAGCTTGAAAGACAAGCTATGATATACAAGTACATGATGGCTTCTGTTCCCGTTCCTCCTGATCTTCTCATCCCTACTTCCACTTCTCGCTCTCCCTGCATGGATGGTGGTTTCAATCTGAGGTTGGCAAGTAGCACTGACCCGGAGCCAGGTAGGTGTAGAAGAACGGATGGTAAAAAATGGAGATGTTCCAGGGATGTGGCTCCTAACCACAAGTACTGCGAGCGCCATATGCACAGAGGCCGTCCCCGTTCAAGAAAGCCTGTGGAAGTTCAcacccccaccaccaccaccaacaacaacaacaatagccaCCAAATCAAGAGGGCTCGCCATGAGTGTAATCCTTTTCCTACACCCGATGTTGCTGTGGCTATTTCTAGCCCCACATCCAGAAAAGATGGATCTTCAGCCCATTTTCTTGCCTCTACTACCACTCAGCCATACCTTGAGTCTTCCCTCTCTCTTCACAACTTTGGTCTCAAAGCTGGGAATTTTGACTCCTTGGCTTCTGTTTCTGCAAATAAGGAACCCAGGGGTTTGGACTGGATGCTGAACGGAGATCCTATTTCACTGGGTGCTTCTTCTGACTCAGAATGGCAGTCTCTGATGCACCACAAAGTTGGAATGACTAGTGAGAGTTCCTGTAACACCACCGAGCCTCAGTATCTGAATTCGTTTGCACTATATAGCTCTGGACTGGATCAACAGAACAGACGCTATCCTTCGTTCCTGAACCCCCTTGTTCCCATGGAAAATTTTCAACGGGAGAAACCTAGGGGTTTCATTGATGCTTGGTCCAACGCAGAAACAGGTGAAAGCAATGCTAACCCCAATACCAACAACAAGAACTCTGCTGCATCAATTGGTAAATTATCCCCTACTTCTCTTGATCTATCAATGGGGGGTGGTAGGGGTGGTGCTGTGCATGAAGATATGGGTACTATTGAAATGGGTTTGGGCCTAATGGAGCCTAATGGAAACACACACACTGATACCAAAATCTCTCTCTCAAATTGGCTCGACCCGGCAACTTGGGTGGCTTCTGGGGGTCCTCTAGCTGAAGTTCTAAGGCCAAGCACGGTCACTGTCACCAATGAAGCAACCTCCAATGCATCCTCACCAGTCACTACACATGTTGAATCTAACAGCCCTCTGGGAACAATGGTGTCATCCCCATCCGGGGTCTTGCAGAAAACGCTTGTTTCATTGTCTGATAGTAGTAGCAATAACAGCCCAACGGTTGCATCGTCAAGGGTCAATTCTGACATGGCCTTGCTCAGGTTTCAatcaaatgtaaattaa 1731 0.4564 MGEFGVSHKEATGKRRSSSSVLGLDAKVQGPEAFHNKMTMMLHHNHHHRPLSSPFDNDSCAGDGDGPTTYMSFTNHINLVSGASVLGPAIDGGCGAASAPVRTLQPFDISPYTSPTTTTTFKSSAGGMAASLGFPFTSAQWKELERQAMIYKYMMASVPVPPDLLIPTSTSRSPCMDGGFNLRLASSTDPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVEVHTPTTTTNNNNNSHQIKRARHECNPFPTPDVAVAISSPTSRKDGSSAHFLASTTTQPYLESSLSLHNFGLKAGNFDSLASVSANKEPRGLDWMLNGDPISLGASSDSEWQSLMHHKVGMTSESSCNTTEPQYLNSFALYSSGLDQQNRRYPSFLNPLVPMENFQREKPRGFIDAWSNAETGESNANPNTNNKNSAASIGKLSPTSLDLSMGGGRGGAVHEDMGTIEMGLGLMEPNGNTHTDTKISLSNWLDPATWVASGGPLAEVLRPSTVTVTNEATSNASSPVTTHVESNSPLGTMVSSPSGVLQKTLVSLSDSSSNNSPTVASSRVNSDMALLRFQSNVN 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2761 576 MobiDBLite consensus disorder prediction 412 433 - -
Ssu1g2761 576 ProSiteProfiles QLQ domain profile. 135 170 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu1g2761 576 SMART QLQ_2 134 170 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu1g2761 576 Pfam QLQ 135 167 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu1g2761 576 ProSiteProfiles WRC domain profile. 189 233 IPR014977 -
Ssu1g2761 576 PANTHER GROWTH-REGULATING FACTOR 7 99 561 - -
Ssu1g2761 576 Pfam WRC 190 232 IPR014977 -
Ssu1g2761 576 MobiDBLite consensus disorder prediction 221 245 - -
Ssu1g2761 576 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g2761 576 PANTHER - 99 561 IPR031137 GO:0005634|GO:0006351|GO:0032502
Ssu1g2761 576 MobiDBLite consensus disorder prediction 510 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2761 Ssu-Chr1 73894259 73896931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2761 397 552 GRF Transcription Factor Family AT5G53660 37.349 2.05e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Ssu1g2761 WRC 6.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2761 - - gmx:100803096 847.04