Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2760 ATGCAATTTATGCCCAGTGGTAACTTGGACGCGAGTCTATACCCAAAAGATGATGAATCAGGATCCTCTCTAACCTTGTTGCAAAGATTGAACATTGCCATTGATGTTGCTTCTGCTATGGACTACTTGCACCACGACTGTGATCCACCAGTAGTGCATTGTGATCTGAAACCTGTCAATGTCCTTCTAGATGAAAATATGGTTGCACATGTTGCAGATTTTGGATTGGCAAGATTTCTCTCTCAAAATACATTAGAGACGCAAAGTAGCACTATAGGACTAAAAGGATCAATCGGCTATATTGCCCCAGAATATGGTCTAGGAGACAAGGCTTCAACTCAGGGCGATGTGTACGGATTTGGGATCCTACTGCTAGAGATGTTCACAGCCAAAAGACCAACTGATGAAATGTTCAAAGAAGGATTAAGCCTAAGCAAATTTGTCTCAGCCATGGATGAGAATCAATTACTGAGGGTTGCTGATCGAAGGCTTATTGATGAATATGAATATTCAGCAACAACACAAAGCTCAAGCACTGATGATCATAGCGGTGCCTTTGGCGGCAACACACATTGGACGCACAAAGCTGAGGAGTGCATAGCTGCTGTGATAAGAGTTGGGTTGTGTTGCACAGCTCATCAGCCCAAAGATCGATGGAGCATCAGAGAGGCCTCAACAAAATTGCAAGCAATAAGGCGCTCTTTGTTGCCTTGTGAATGCGAAGTAGGCCTCAAGCCCAGATGCAATCTGTTATAG 756 0.4378 MQFMPSGNLDASLYPKDDESGSSLTLLQRLNIAIDVASAMDYLHHDCDPPVVHCDLKPVNVLLDENMVAHVADFGLARFLSQNTLETQSSTIGLKGSIGYIAPEYGLGDKASTQGDVYGFGILLLEMFTAKRPTDEMFKEGLSLSKFVSAMDENQLLRVADRRLIDEYEYSATTQSSSTDDHSGAFGGNTHWTHKAEECIAAVIRVGLCCTAHQPKDRWSIREASTKLQAIRRSLLPCECEVGLKPRCNLL 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2760 251 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 228 - -
Ssu1g2760 251 SMART serkin_6 1 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2760 251 ProSitePatterns Serine/Threonine protein kinases active-site signature. 51 63 IPR008271 GO:0004672|GO:0006468
Ssu1g2760 251 SUPERFAMILY Protein kinase-like (PK-like) 1 226 IPR011009 -
Ssu1g2760 251 Pfam Protein tyrosine and serine/threonine kinase 1 140 IPR001245 GO:0004672|GO:0006468
Ssu1g2760 251 ProSiteProfiles Protein kinase domain profile. 1 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2760 251 PANTHER RECEPTOR-LIKE PROTEIN 55 1 228 - -
Ssu1g2760 251 Gene3D Transferase(Phosphotransferase) domain 1 4 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2760 Ssu-Chr1 73891246 73892145 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2760 2 236 Receptor kinase-like Gene Family AT3G47110 44.033 1.54e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Ssu1g2760 PK_Tyr_Ser-Thr 3.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2760 - - gmx:100776054 405.601