Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2758 ATGCTCTGTCTGGGTGGTCTGCAGATTCCAATCACTGCACCTGGTAAAGTCCCTCCATCATTTGGcaatctcttttctcttaaGAATCTTGCCTTGGCAAGGAACGGCTTTGTGGGTGAGATTCCAAATGAACTTGGTAATCTCCCCAATCTTTCCTATCTTCAACTCTCAGAGAACAATTTCTCTGGCGAGTTTCCCACTTCTATCTTCAACATCTCTTCCTTAGTCTACTTATCCGTGACAAGGAACAATCTATCAGGCAAGTTACCACAAAATTTAGGCCATGCTCTTCCAAATTTAAGGAGTCTATATCTGTCAACTAATAGGTTTGAAGGGGTAATTCCTAATTCCATATCCAATGCCTCAAGCCTTCAAGACATTGAACTTGCTCACAATAAATTTCACGGCCCCATACCTCTATTCAACAACTTGAAATACCTTACCCACCTCTTTCTTGGTCATAATTTTCTCTCGTCCACAACCTCGTTGAATTTTCAGTTCTTTGATTCCCTTAGAAACTCCACCCAGTTACAAATTCTCTTTATCAATGATAACCATTTGGCTGGGGAGCTCCCAAGCTCTTTTGCGAATCTGTCTAGCACTCTCCAACAATTCTGTGTTGCTAATAACTGGGTAACTGGCAACATTCCTcaagaaatgaagaaatttcaaaatctcATAGGATTGtcctttgaaaataattttttcactggAGAGTTACCATCAGAAATAGGAGCACTACATAAGCTGGAGCGACTTATGACATACAGCAATAGATTGTCCGGGGAAATTCCTGACATTTTTGGCAATTTCACAAATCTGTATATCTTTGCTGTGGGAGATAACCAGTTCTCGGGTCCAATTCACTCAAGTATTGGACAGTGCAAGAGATTAAATTTTCTTGACCTGGGAATGAATAGGCTTGGTGGGACCATACCGAAGGAGATTTTTCAGCTGTCTGGCTTAACAGCTTTGTACTTAATAGGAAACTCTCTGCATGGTTCGCTTCCTCTTGAGGTCAACATCATGACACAGCTTGAGACCATGGATATCTCTGACAACCAGTTGTCAGGGAACATTCCTAAGGAAATAGGGAGCTGTTCTAGCTTGAAGACACTTGTGGTGGCAAGAAACAAATTCAATGGCTCAATCCCAACTAATCTTGGGAATTTAGCATCCCTTGAGACTTTGGATTTATCATCAAACAATCTCACCGGCCCTATCCCTGAAAGTTTAGAAAAGCTCAAGTACATAcaaacattaaatttgtctttcaaCCATTTGGAAGGGGAGGTTCCTATGAAAGGTGTTTTTATGAACCTTACCAAGTTTGATCTTCGAGGTAACAACCAACTCTGTAGCCTTAACATGGAAATTGTGCAGAAGTTGGGAATATTCTTGTGTGTTGttggtaaaaagaaaagaaagattttacTCCCTATCATACTTGCAGTTGTTGGTGCTACTGCTTTGTTCACCGCAATTCTCTTTGTATTGTGGACAATGATGTCccgaaagaagagaagagagcagGGGAAAACCAGTGTACCATCTGCCCCTTTTAAAGGGTTGCCTCAAAATATATCTTATGGTGATATTCGGATTGCCACAAACAATTTTGCAGCTGAAAACTTGATTGGAAAAGGAGGCTTTGGCTCAGTGTATAAGGGTGTGTTCAGCTTCTGCACTGGTGAAACCGCCACCCTTGCTGTCAAAGTCCTGGACCTGCAACAGAGCAAAGCTTGTCAGAGTTTTAATGCTGAATGTGAAGCTTTGAAAAATGTTAGACATCGGAACCTAGTGAAGGTTGTCACTTCTTGCTCCAGCATTGATTATAAGGGAGAGGAATTTAAGGCCCTTGTTATGCAATTTATGCCCAGTGGTAACTTGGGCGCGAGTCTATACCGAGAAGATGATGAATCAGGATCCTCTCTAACCCTGTTGCAAAGATTAAACATTGCCATTGATGTTGCTTCTGCTATGGACTACTTGCACCATGACTGTAATCCACCAGTGGTGCATTGTGATCTGAAACCTGTCAATGTCCTTCTAGATGAAAATATGGTAGCACATGTTGCAGATTTTGGATTGGCAAGGtttctttctcaaaatatatcAGAGAAGCAGAGTAGCACTCTGGGACTGAAGGGATCAATCGGGTATATTGCCCCAGAATATGGTCTGGGAGGCAAGGCTTCAACTCAGGGCGATGTGTACAGTTTTGGGATCCTACTGCTAGAGATGTTCACAGCCAAAAAACCAACCGATGAAATGTTCAAAGAAGGGTTAAGCCTAAGCGAATTTGTCTCAGCCATGGATGAGAATCAAGTACTGAAGGTTGCTGATCGAAGGCTTATTGACGATTGTGAACATTGGACACAAAGCTCAAGCACCAAGTATCATAGCAGTGGCTTTGGCGGCAACACACATTGGACGCGCAAAGCTGAGGAGTGCATAGCTGCTGTGATAAGAGTTGGGTTGTGCTGCACAGCTCATCAACCCAAAGATCGATGGAGCATCAGAGAGGCCTCAACAAAATTGCAAGCAATTAGGCACTCTTTGCTGGCCTTGTGA 2574 0.4044 MLCLGGLQIPITAPGKVPPSFGNLFSLKNLALARNGFVGEIPNELGNLPNLSYLQLSENNFSGEFPTSIFNISSLVYLSVTRNNLSGKLPQNLGHALPNLRSLYLSTNRFEGVIPNSISNASSLQDIELAHNKFHGPIPLFNNLKYLTHLFLGHNFLSSTTSLNFQFFDSLRNSTQLQILFINDNHLAGELPSSFANLSSTLQQFCVANNWVTGNIPQEMKKFQNLIGLSFENNFFTGELPSEIGALHKLERLMTYSNRLSGEIPDIFGNFTNLYIFAVGDNQFSGPIHSSIGQCKRLNFLDLGMNRLGGTIPKEIFQLSGLTALYLIGNSLHGSLPLEVNIMTQLETMDISDNQLSGNIPKEIGSCSSLKTLVVARNKFNGSIPTNLGNLASLETLDLSSNNLTGPIPESLEKLKYIQTLNLSFNHLEGEVPMKGVFMNLTKFDLRGNNQLCSLNMEIVQKLGIFLCVVGKKKRKILLPIILAVVGATALFTAILFVLWTMMSRKKRREQGKTSVPSAPFKGLPQNISYGDIRIATNNFAAENLIGKGGFGSVYKGVFSFCTGETATLAVKVLDLQQSKACQSFNAECEALKNVRHRNLVKVVTSCSSIDYKGEEFKALVMQFMPSGNLGASLYREDDESGSSLTLLQRLNIAIDVASAMDYLHHDCNPPVVHCDLKPVNVLLDENMVAHVADFGLARFLSQNISEKQSSTLGLKGSIGYIAPEYGLGGKASTQGDVYSFGILLLEMFTAKKPTDEMFKEGLSLSEFVSAMDENQVLKVADRRLIDDCEHWTQSSSTKYHSSGFGGNTHWTRKAEECIAAVIRVGLCCTAHQPKDRWSIREASTKLQAIRHSLLAL 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2758 857 PRINTS Leucine-rich repeat signature 391 404 - -
Ssu1g2758 857 PRINTS Leucine-rich repeat signature 346 359 - -
Ssu1g2758 857 SMART LRR_typ_2 48 72 IPR003591 -
Ssu1g2758 857 SMART LRR_typ_2 247 270 IPR003591 -
Ssu1g2758 857 SMART LRR_typ_2 97 120 IPR003591 -
Ssu1g2758 857 SMART LRR_typ_2 295 319 IPR003591 -
Ssu1g2758 857 SMART LRR_typ_2 343 367 IPR003591 -
Ssu1g2758 857 SMART LRR_typ_2 391 415 IPR003591 -
Ssu1g2758 857 ProSiteProfiles Protein kinase domain profile. 540 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2758 857 SMART LRR_sd22_2 391 420 - -
Ssu1g2758 857 SMART LRR_sd22_2 174 200 - -
Ssu1g2758 857 SMART LRR_sd22_2 144 165 - -
Ssu1g2758 857 SMART LRR_sd22_2 343 362 - -
Ssu1g2758 857 ProSiteProfiles Leucine-rich repeat profile. 393 416 IPR001611 GO:0005515
Ssu1g2758 857 SUPERFAMILY L domain-like 15 211 - -
Ssu1g2758 857 Gene3D Ribonuclease Inhibitor 73 141 IPR032675 -
Ssu1g2758 857 Gene3D Ribonuclease Inhibitor 6 72 IPR032675 -
Ssu1g2758 857 Gene3D Ribonuclease Inhibitor 142 462 IPR032675 -
Ssu1g2758 857 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 17 847 - -
Ssu1g2758 857 PANTHER RECEPTOR-LIKE PROTEIN 55 17 847 - -
Ssu1g2758 857 Gene3D Transferase(Phosphotransferase) domain 1 625 855 - -
Ssu1g2758 857 ProSitePatterns Protein kinases ATP-binding region signature. 546 572 IPR017441 GO:0005524
Ssu1g2758 857 SUPERFAMILY Protein kinase-like (PK-like) 516 846 IPR011009 -
Ssu1g2758 857 Pfam Protein tyrosine and serine/threonine kinase 543 761 IPR001245 GO:0004672|GO:0006468
Ssu1g2758 857 SUPERFAMILY L domain-like 202 457 - -
Ssu1g2758 857 SMART serkin_6 540 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2758 857 Gene3D Phosphorylase Kinase; domain 1 522 624 - -
Ssu1g2758 857 ProSitePatterns Serine/Threonine protein kinases active-site signature. 672 684 IPR008271 GO:0004672|GO:0006468
Ssu1g2758 857 Pfam Leucine rich repeat 369 428 IPR001611 GO:0005515
Ssu1g2758 857 Pfam Leucine Rich Repeat 99 120 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2758 Ssu-Chr1 73814945 73817947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2758 15 852 Receptor kinase-like Gene Family AT3G47570 42.000 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Ssu1g2758 PK_Tyr_Ser-Thr 2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2758 - - gmx:100776054 1360.51