Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2755 ATGTCACAGCCAAGGCAAAACAAGATGATGATGAGTCCAAACGTTGCCAAACAAGTTGGTGACACAACCTATACTAAGATCTTTGTTGGAGGACTGGCTTGGGAGACTAAGAGAGACACTTTGAAACGCTATTTTGATCAGTTTGGGGAGATCTTAGAAGCTGTTGTCATCACTGACAGAAACACTGGAAGATCAAAAGGATATGGCTTTGTGACTTTTAGGGACCCAGATTCTGCAATAAGAGCTTGCCAGAATCCCTATCCTGTGATTGATGGAAGGAGAGCTAACTGTAATCTTGCAGCTCTTGGTGCCCAGAAATTTGATCCATCTTTAACCGGGAGGCTAAAATTCAGTAGCCCTTCATGGAATACGGCACCAATCCCATTTCAAGGCACCTCCACTTATTATAATCAGCACATACCCCAGTATCCATTTCCGTATCCAGCCTACAGGTATCCTGGTTATCCTCACCCACAAGAGTTGTATGAAATGAACTACAATAATGTATATGGTGGACAGCAGCTTCCACTCCGCTGGTATCCAGCATACTCCCAACCCTTTTATGGCCTTAGTAGACAGTTTATTCCAACAGCATATGTGAAAAAGGCACAAATCCCTGACATGTCACCTCAGGAGTTCACAGTTGTTGGCTTCTCAGAACCTATTTCGGCTTCTCCTTCAATTTCCAGCACTGCAGGATTAGTCACAGGAACAGTACCTGCAACAGGAGTGCTAGAATCCCCCCAAGATCAGAAATCTTCAACTTAA 768 0.4401 MSQPRQNKMMMSPNVAKQVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGEILEAVVITDRNTGRSKGYGFVTFRDPDSAIRACQNPYPVIDGRRANCNLAALGAQKFDPSLTGRLKFSSPSWNTAPIPFQGTSTYYNQHIPQYPFPYPAYRYPGYPHPQELYEMNYNNVYGGQQLPLRWYPAYSQPFYGLSRQFIPTAYVKKAQIPDMSPQEFTVVGFSEPISASPSISSTAGLVTGTVPATGVLESPQDQKSST 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2755 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 102 IPR000504 GO:0003723
Ssu1g2755 255 CDD RRM_RBM24_RBM38_like 25 100 - -
Ssu1g2755 255 PANTHER BOULE-RELATED 1 255 IPR037366 GO:0003729
Ssu1g2755 255 SMART rrm1_1 26 98 IPR000504 GO:0003723
Ssu1g2755 255 Gene3D - 1 109 IPR012677 -
Ssu1g2755 255 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
Ssu1g2755 255 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 255 - -
Ssu1g2755 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 84 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2755 Ssu-Chr1 73787771 73789171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2755 21 101 C2H2 Transcription Factor Family AT2G19380 41.975 4.35e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2755 - - gmx:100788634 466.077