Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2754 ATGGCGGTTGCTGAGAATGTTGGGGCCAAAATCGGTTCTTCGAGTCAGAATTTGGACAACAGTGTAGTGTCATCGGACACAGGCGAGGTTGAGAAATCGAAACCTAGAACTGGGTCCATCAACGGCGATCAGAAGCTGAACAACGGTGTGTTCAACCATCAAGATAGAATTCCTGGCACTATGTCAGTGCCCAATAGCAATTATAACTACAAGGCCCAAATGGGTCAGATGCACGCAAATGGGGTGAACAATGATGGGTATGGGATGAATGGGGTCAGGAGTGGGGAGAATGGGGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCCCATCACTAACCAATACTCATGGCTACCTAACTGGACCTGATGCCGGTGCCGGGTTTGGTTAccctaataattttatactgctCAATAATTTTGGTAATGTTAACGGTCAAACTAACAGAAGGAGGAAGAATGGCTTTAATCATGGGAAGCGAAGAGTGAATCATAAAATAGATAtggagaaaagggaagagatGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCGGCGCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGGGATCCTAATTCTATTCTTCGGTTTGCCTTCATTGAGTTTACAGATGAAGAATGTGCAAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTATCCATTGAGAGTGCTACCCTCAAAAACTGCTATTGCACCTGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAGCTTACTCAAGCTGATGTTAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGGTTGAGGCTTCTTGGGGATTACCATCATTCTACTCGGATTGCATTTGTTGAGTTCACACTGGCTGAGAGTGCAATTGCAGCTCTAAGCTGTAGTGGGGTGATTTTGGGTTCACTGCCCATAAGGGTAAGTCCATCAAAGACACCGGTCCGGTCACGTGCTCCTCGCACTTCTATGCACTGA 1137 0.4354 MAVAENVGAKIGSSSQNLDNSVVSSDTGEVEKSKPRTGSINGDQKLNNGVFNHQDRIPGTMSVPNSNYNYKAQMGQMHANGVNNDGYGMNGVRSGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNTHGYLTGPDAGAGFGYPNNFILLNNFGNVNGQTNRRRKNGFNHGKRRVNHKIDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEECARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTLAESAIAALSCSGVILGSLPIRVSPSKTPVRSRAPRTSMH 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2754 378 Pfam Ataxin-2 C-terminal region 113 127 IPR009818 -
Ssu1g2754 378 SUPERFAMILY RNA-binding domain, RBD 281 372 IPR035979 GO:0003676
Ssu1g2754 378 MobiDBLite consensus disorder prediction 9 28 - -
Ssu1g2754 378 SMART rrm1_1 291 362 IPR000504 GO:0003723
Ssu1g2754 378 SMART rrm1_1 194 264 IPR000504 GO:0003723
Ssu1g2754 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 258 IPR000504 GO:0003723
Ssu1g2754 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 359 IPR000504 GO:0003723
Ssu1g2754 378 Gene3D - 157 270 IPR012677 -
Ssu1g2754 378 Gene3D - 277 374 IPR012677 -
Ssu1g2754 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 268 IPR000504 GO:0003723
Ssu1g2754 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 366 IPR000504 GO:0003723
Ssu1g2754 378 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 378 - -
Ssu1g2754 378 CDD RRM1_CID8_like 191 270 IPR034823 -
Ssu1g2754 378 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 378 - -
Ssu1g2754 378 MobiDBLite consensus disorder prediction 39 58 - -
Ssu1g2754 378 MobiDBLite consensus disorder prediction 1 58 - -
Ssu1g2754 378 SUPERFAMILY RNA-binding domain, RBD 169 270 IPR035979 GO:0003676
Ssu1g2754 378 CDD RRM2_CID8_like 286 367 IPR034825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2754 Ssu-Chr1 73773866 73778945 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2754 192 354 Eukaryotic Initiation Factors Gene Family AT1G34140 25.749 1.93e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2754 - - gmx:106794116 725.317