Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu1g2753 | ATGGCGGTTGCTGAGAATGTTGGGGCGAAAATCGGTTCTTCGGGTCAGAATTTGGACAACGGTGTAGTGTCATCGGATTCGAGTGACGTTGAGAAATCGAAAACCAGAAGCGATCAGAGTCTGAACAACGGTGCTTTCAACCATCAACAGCACCAAGAGAGAGTTCCCAGCACTATGTCAGTTCCTAACGGGAATTACAGCTACAAGGCTCAGATGCACGCAAATGGGGTGAACAATGATGGGTATGGAATGAATGGGGTCAGGAGTGGGGAGGATGGGGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAACCCCATGGCTGAGGAGTTTGTGCCTCCATCACTGGCCAATAATCACGGCTACTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACCATTTTATGCTGCCTAATAACTATGGCAATACTGATGGGCAAACTAACAACAGAAGGAGGAAGAATGGCTATAATCCTGGAAAGAGAAGAGTGAATCATAAAATGGATatggagaagagagaagagatgaTTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTGGTTACCGAAGAGCAGCTGGCGGCACTCTTTCTTAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCTTCATCGAGTTTACAGATGAAGATGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACTATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCGCCTGTCAATCCAACTTTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATCGACAAGAAGCTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCACCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGTGGTGTGATTTTGGGTTCACTGCCTATAAGGGTAAGTCCATCAAAGACACCAGTGCGTCCTCGCGCTCCTCGTTCCTCCATGCACTGA | 1119 | 0.4531 | MAVAENVGAKIGSSGQNLDNGVVSSDSSDVEKSKTRSDQSLNNGAFNHQQHQERVPSTMSVPNGNYSYKAQMHANGVNNDGYGMNGVRSGEDGGESFKRDMRDLEELLSKLNPMAEEFVPPSLANNHGYLAGPNAGFGYTNHFMLPNNYGNTDGQTNNRRRKNGYNPGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRSSMH | 372 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu1g2753 | 372 | Pfam | Ataxin-2 C-terminal region | 108 | 122 | IPR009818 | - | |
| Ssu1g2753 | 372 | CDD | RRM1_CID8_like | 185 | 264 | IPR034823 | - | |
| Ssu1g2753 | 372 | SMART | rrm1_1 | 285 | 356 | IPR000504 | GO:0003723 | |
| Ssu1g2753 | 372 | SMART | rrm1_1 | 188 | 258 | IPR000504 | GO:0003723 | |
| Ssu1g2753 | 372 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
| Ssu1g2753 | 372 | SUPERFAMILY | RNA-binding domain, RBD | 274 | 366 | IPR035979 | GO:0003676 | |
| Ssu1g2753 | 372 | MobiDBLite | consensus disorder prediction | 10 | 28 | - | - | |
| Ssu1g2753 | 372 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 284 | 360 | IPR000504 | GO:0003723 | |
| Ssu1g2753 | 372 | MobiDBLite | consensus disorder prediction | 149 | 171 | - | - | |
| Ssu1g2753 | 372 | CDD | RRM2_CID8_like | 280 | 361 | IPR034825 | - | |
| Ssu1g2753 | 372 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR | 1 | 372 | - | - | |
| Ssu1g2753 | 372 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 187 | 262 | IPR000504 | GO:0003723 | |
| Ssu1g2753 | 372 | PANTHER | POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE | 1 | 372 | - | - | |
| Ssu1g2753 | 372 | SUPERFAMILY | RNA-binding domain, RBD | 158 | 263 | IPR035979 | GO:0003676 | |
| Ssu1g2753 | 372 | MobiDBLite | consensus disorder prediction | 37 | 62 | - | - | |
| Ssu1g2753 | 372 | Gene3D | - | 147 | 264 | IPR012677 | - | |
| Ssu1g2753 | 372 | Gene3D | - | 271 | 368 | IPR012677 | - | |
| Ssu1g2753 | 372 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 286 | 353 | IPR000504 | GO:0003723 | |
| Ssu1g2753 | 372 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 189 | 252 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu1g2753 | Ssu-Chr1 | 73728081 | 73733505 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu1g2753 | 186 | 348 | Eukaryotic Initiation Factors Gene Family | AT1G34140 | 25.150 | 6.00e-10 | 58.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu1g2753 | - | - | gmx:100787572 | 691.034 |