Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2751 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAACCTGCCCTCTGATATAAGAGAGTCAGAAATTGAAGATCTATTCTACAAGTATGGCCGTATAATGGATATTGAATTGAAGATTCCTCCCCGCCCACCATGTTATTGCTTTGTTGAGTTTGATAATGCTCGAGATGCTGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGCCGGTTAAGGGTGGAGCTTGCTCATGGCGGTAGAGGGCCATCATCAAGTGATCGACGTGGAtatggaggaggaggaggaggaggtggtggtggtggtggtggccgTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCTATTCGGAAACTGGATGACACTGAGTTTAGAAATCCTTGGGCAAGAGCTTATATTCGAGTGAGGAAGTATGAGGCTAGTCGTTCTAGGAGCCGCAGCAGAAGCCCCAGCAGGAGCAGAAGCCCAAAAAGGGCTAGAAGTAGATCTTTGGAGCGTTCTGTGTCTAGGTCACGATCTAGATCTCGATCAGCATCACCGATCAAATCTTCCAGGTATACAAAACGTACTATGTTGAATAAATGGTTTGTAATACCTTCTATATGCACCTGA 777 0.4157 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYEASRSRSRSRSPSRSRSPKRARSRSLERSVSRSRSRSRSASPIKSSRYTKRTMLNKWFVIPSICT 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2751 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Ssu1g2751 258 SUPERFAMILY RNA-binding domain, RBD 6 186 IPR035979 GO:0003676
Ssu1g2751 258 CDD RRM2_SF2_plant_like 117 192 - -
Ssu1g2751 258 CDD RRM1_SF2_plant_like 8 79 - -
Ssu1g2751 258 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 242 - -
Ssu1g2751 258 Gene3D - 2 116 IPR012677 -
Ssu1g2751 258 SMART rrm1_1 118 187 IPR000504 GO:0003723
Ssu1g2751 258 SMART rrm1_1 8 78 IPR000504 GO:0003723
Ssu1g2751 258 MobiDBLite consensus disorder prediction 195 238 - -
Ssu1g2751 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Ssu1g2751 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 181 IPR000504 GO:0003723
Ssu1g2751 258 MobiDBLite consensus disorder prediction 81 107 - -
Ssu1g2751 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Ssu1g2751 258 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 242 - -
Ssu1g2751 258 MobiDBLite consensus disorder prediction 213 227 - -
Ssu1g2751 258 Gene3D - 117 194 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2751 Ssu-Chr1 73708389 73713640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2751 8 175 Eukaryotic Initiation Factors Gene Family AT4G34110 24.138 1.71e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2751 K12890 - gmx:100800653 364.77