Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2749 ATGGAATCCGGCGTGCAGGGTTGCATCTTAGCCATTATGATTCTCCACGATGAGGAAATCGCAGTCACCGCCGAGAAGATCAACGCTTTGTTGAAGGCCGCTAACGTCTCCGCCGAGTCCTACTGGCCCAGCCTCTTCGCCAAGCTCGCCCAGAATAGGAACATCGAAGACCTCATTTTGAACGCCGGTTCTGGGGGTGGTGCCGCCGTCGCCGTTTCTGCTCCCGCcgccggtggtggtggtgccgcCGCCGAAGCACCCGCCGCCGAGGAAAAGAAGGAAGAAGTGAAGGAAGAAAGTGATGACGACATGGGATTTGGCTTGTTTGATTAG 333 0.5225 MESGVQGCILAIMILHDEEIAVTAEKINALLKAANVSAESYWPSLFAKLAQNRNIEDLILNAGSGGGAAVAVSAPAAGGGGAAAEAPAAEEKKEEVKEESDDDMGFGLFD 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2749 110 CDD Ribosomal_P1 6 109 - -
Ssu1g2749 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 110 - -
Ssu1g2749 110 Hamap 50S ribosomal protein L12 [rpl12]. 6 110 IPR027534 GO:0003735|GO:0005840|GO:0006414
Ssu1g2749 110 Gene3D - 4 63 IPR038716 -
Ssu1g2749 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED 1 110 - -
Ssu1g2749 110 MobiDBLite consensus disorder prediction 77 110 - -
Ssu1g2749 110 MobiDBLite consensus disorder prediction 87 104 - -
Ssu1g2749 110 Pfam 60s Acidic ribosomal protein 22 109 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2749 1 110 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 49.558 3.78e-32 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2749 K02942 - gmx:100801741 142.51