Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2744 ATGGCATTGGCACTTGCTCCCTGCGCAAAACGTCCAAGTTGTACCGCGTTTCATCCATACCATTACCCACCAAATCCTTCACTCTTCCGTCGACTCTCCCTTCATTCTCCTTCGACCTTCCATTCTAAACTTGAAGCTCAACCCCAATGCTCCGTCGCCAAACCACAACTATCAAACAAGCACTCCATTCACCGGCACCGCTGCAGTAACTCCCTCGCCACCGCCGACGCCGAAATCGcgTCGTTCGTTGCTCTGTTTCAAGAAATTGGGATTGGCTTTGCGGAAACCCAAGTGCTCTTGTTCAACAACCCCGACCTAACCTCCGTGTCACTAGACTCATTGCGCGCTCGCCTTCGCTCTCTACACTCTCTCGGCTTCGACCCTCTCACTCTCTTCAAATTAGTCACAAAGCGACCAACCGTCCTAACGGCCGACGAAATTGACCCTTTCTTAAGCTTCCTGAGAGACAAATTGCAAGGACAACTCGCGAAAGAGCAACTAAATCGTCTTTTGTCTGCCACGGAACCGAGACTCTTGGCGACTTTTCCTCAGAAGGTTCAATTCCTCGTTGACCGAGGAGTCCCCGTTGACCAGGTTGTCCACGTGCTCAACAAAGTGAATTTGCTAAAGGCCCTGTGTCAAAGGTCGGTTGATGAGATTAACAGAACCATAGCTTTCTTAGAACCCTTCGGAGGCATTGCTTTGATTCTGAAGCGCCCTGCGATTTTGAACCATGATTTGGAGGCCCAACTTGTTCCTAGAGTCAATGTTCTGATGGAGCTTAGTGATGGAGACGAGGATGGTGTTCGGAGAGTGCTGCTTAGGTTCCCTATGTTTTTGAACTATAGTGTGGAGCATGTGGAGGGACATGTAGGGTTTCTGAGATCTTTTGTTGGTTTTGACGATGGACAGATATTTAGGATAATACTAGGATACCCGGCTATTGTTACTGCTAGCAGAGAGAGGAAACTGCGTCCTAGGATACAGTTTCTCAAGGAATGTGGGTTGGACTCGGGTGACATGTTCAAGTTCTTGATCAAAGCGCCCACGTTTCTAAGCATTTCGTTCGATGAGAACATTGCGTATAAGCTGGTGTTGCTGGTGAAGATTGGGTATAGGTATAGGTCGAAGGAGCTGGCAATGGCGATTAGGTCTGCTACTAGGACAAACTGTGGGAACATGCAGAAGGTCATTGGTTTGTTCTTGAATTATGGGTTTTCGTGTGAGGACATTGTTGCTATGTGCAAGAAGCAGCCACAGATACTGCAGTATAATCACGCTTCTTTGGAGAAGAAGATGGAGTACTTGATAGAGGAGATGGGCCGTGACATTGAGGAGTTGCTGCTTTTTCCTGCGTTCCTTGGGTACAAGTTTGATGATAGGATTAAGCATAGGTATGAAGTGAAGAAGAGTGTTAGAGGCGGGGGAATGTCTATCAATAAGCTTTTAACTGTTTCTGATGAGAGATTCACTGGCAAAGGAAAAAAAGTCCATGCCATTGCCGAGCTTGAGTAA 1515 0.4726 MALALAPCAKRPSCTAFHPYHYPPNPSLFRRLSLHSPSTFHSKLEAQPQCSVAKPQLSNKHSIHRHRCSNSLATADAEIASFVALFQEIGIGFAETQVLLFNNPDLTSVSLDSLRARLRSLHSLGFDPLTLFKLVTKRPTVLTADEIDPFLSFLRDKLQGQLAKEQLNRLLSATEPRLLATFPQKVQFLVDRGVPVDQVVHVLNKVNLLKALCQRSVDEINRTIAFLEPFGGIALILKRPAILNHDLEAQLVPRVNVLMELSDGDEDGVRRVLLRFPMFLNYSVEHVEGHVGFLRSFVGFDDGQIFRIILGYPAIVTASRERKLRPRIQFLKECGLDSGDMFKFLIKAPTFLSISFDENIAYKLVLLVKIGYRYRSKELAMAIRSATRTNCGNMQKVIGLFLNYGFSCEDIVAMCKKQPQILQYNHASLEKKMEYLIEEMGRDIEELLLFPAFLGYKFDDRIKHRYEVKKSVRGGGMSINKLLTVSDERFTGKGKKVHAIAELE 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2744 504 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF8, CHLOROPLASTIC 87 496 - -
Ssu1g2744 504 SMART mt_12 444 476 IPR003690 GO:0003690|GO:0006355
Ssu1g2744 504 SMART mt_12 132 161 IPR003690 GO:0003690|GO:0006355
Ssu1g2744 504 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Ssu1g2744 504 SMART mt_12 342 373 IPR003690 GO:0003690|GO:0006355
Ssu1g2744 504 SMART mt_12 233 264 IPR003690 GO:0003690|GO:0006355
Ssu1g2744 504 SMART mt_12 97 127 IPR003690 GO:0003690|GO:0006355
Ssu1g2744 504 SMART mt_12 412 443 IPR003690 GO:0003690|GO:0006355
Ssu1g2744 504 SMART mt_12 306 337 IPR003690 GO:0003690|GO:0006355
Ssu1g2744 504 Gene3D Transcription termination factor 3, mitochondrial 266 499 IPR038538 -
Ssu1g2744 504 Gene3D Transcription termination factor 3, mitochondrial 56 265 IPR038538 -
Ssu1g2744 504 PANTHER CGI-12 PROTEIN-RELATED 87 496 IPR003690 GO:0003690|GO:0006355
Ssu1g2744 504 Pfam mTERF 393 490 IPR003690 GO:0003690|GO:0006355
Ssu1g2744 504 Pfam mTERF 85 296 IPR003690 GO:0003690|GO:0006355
Ssu1g2744 504 Pfam mTERF 293 393 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu1g2744 mTERF 2.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2744 - - gmx:100799904 712.99