Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2742 ATGGGGGAGGTGGTGATGAGCGGAGACAAGTTAGTGAGAATGGAGGGGGTGGAGAAGGAAGAGAGTGGTGGGAGTGGGAGCAAGGGTGAATTGGAGGGGTTGATGAGGTGGGAGAAGTTCTTGCCCAGGATGGTTTTGAGGGTGCTTTTGGTTGAAGCTGATGACTCCACCAGGCAGATTATAGCCGCGCTTCTCAGAAAATGCAGCTACAAAGTGGTTGCTGTTCCTGATGGTTTGAAGGCATGGGAATTACTCAAGGGAAGACCGCACAATGTTGATCTAATACTGACAGAAGTGGATTTGCCTTCCATATCTGGCTATGCACTTCTCACATTAATTATGGAGCATGAGATTTGCAAAAACATCCCTGTCATAATGATGTCTTCCCAAGATTCAATTAGCACAGTATACAAATGCATGCTGAGAGGTGCTGCTGATTATCTTGTTAAGCCCATTAGAAAAAATGAACTGAGGAATTTGTGGCAACATGTTTGGAGAAGACAATCGTCAACCACTGGCATAAATGGTCCCCAAGACGAGAGTGTTGCACAGCAGAAGGTTGAAGTCACTGCTGAAAACAATGCTGCCAGTAATCGTTCAAGTGGCGAGGCTGCTTGCATTCAGAGAAATAAGGAATTAATTGAGAAAGAAAGTGATGCTCAGAGCTCTTGTACGAAGCCTGACTTGGAAGCTGAGAGTGGCCCTGTCGATAATATACAGGATTTTTCTCCACTGAAATGTGGGGAAGCATATGCAAGTGGAACAGAGACACAAGAGGTTGAAACATGCATTCGTTTAGGCCAGACATTGATGATGCATGACAGTCATGCTGGAGgaTTAACTATGGGTATCCACAAAAATGGTGAGGCAAGCACAACTAATGACAAGGATGCTGATCCAGAGAATTTTGGGAATGCTAGCATCAGTGGTGAGGCTCATGACAATCACTATGTTCAAATTAACTCTTCCAAGGAAGCTATTGACTTGATTGGAGCATTTCATACTCATCCAAACTGCACCCTAAAAAATTCCATAGTTAATTGCACAGGCAAGTTTGACCTTTCTCCTCAATTGGATCTTTCTCTGAGAAGATCTCGTCCCAGCAGCTTTGAGAATGAACTCACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACTAACAGGCAATTGCAAGCCTCAACGCCTGCGGTGTTAATTAACTTCTCTGATCAACAAAGAGAACAGAGAACAAATGGTGAGAAAAGCATCTCACATATCGCTACTGGCTGCAACTCAGATAGTTCAACACCTAGTATGCAAAGATGTATCATGTCTCCAACTACAGTCCAATCAAAAGGATCTGAACTCGCAACCTCACACTCCCAGCAAGGGCATTCTCTCCCAATTCAAGTAAAGGGTGTACGGTTCAATGATCTATGCACAGCCTATGGTTCTGTACTTCCTTCAATGTTTCGTAGAGAGTCAGGTCCACCAGCAATGCCAAGTCCAAGCTCAGTTGTGCTCCTTGAACCAAACTTtcaagtaaatgcattttatcaGTCAAATATGAGAGAGAGTAGTTCAGAGCAGCTTTATGAGCCTCGTGTTCCCAGTGGAAACAGCACCCAAAACCACATTGTGTACACACAGGAACACAAATCAGAACATGCAGAGGAACGAGGACATATCTCTCCTACAACTGATCAAAGTGTGTCAAGTAGTTTCTGTAATGGAAATGCAAGCCATCTTAACAGCATTGGTTATGGAGGCAACTGTGGAAGTAGCAGCAATGTTGATCAAGTTACCACCGTCAGGGCAGCTTCAGAGGGTAAGAATGAAGACCTCACAAACAATGGAAACTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAACAAATTCCGCttgaaaaggaaagagagatGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAACGTCCCAGAGTGAAAGGACAATTTGTTCGTCAAGTGCATCCTGATCCTGTTGTTGCAGAAAAAGATGGCAAAGAATATGATCATTCACAGATTTCTGACTCACTGAGAGGAGAGCATGAATTCTTAGTATAA 2106 0.4307 MGEVVMSGDKLVRMEGVEKEESGGSGSKGELEGLMRWEKFLPRMVLRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWELLKGRPHNVDLILTEVDLPSISGYALLTLIMEHEICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSTTGINGPQDESVAQQKVEVTAENNAASNRSSGEAACIQRNKELIEKESDAQSSCTKPDLEAESGPVDNIQDFSPLKCGEAYASGTETQEVETCIRLGQTLMMHDSHAGGLTMGIHKNGEASTTNDKDADPENFGNASISGEAHDNHYVQINSSKEAIDLIGAFHTHPNCTLKNSIVNCTGKFDLSPQLDLSLRRSRPSSFENELTEERHTLMHSNASAFKRYTNRQLQASTPAVLINFSDQQREQRTNGEKSISHIATGCNSDSSTPSMQRCIMSPTTVQSKGSELATSHSQQGHSLPIQVKGVRFNDLCTAYGSVLPSMFRRESGPPAMPSPSSVVLLEPNFQVNAFYQSNMRESSSEQLYEPRVPSGNSTQNHIVYTQEHKSEHAEERGHISPTTDQSVSSSFCNGNASHLNSIGYGGNCGSSSNVDQVTTVRAASEGKNEDLTNNGNSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDPVVAEKDGKEYDHSQISDSLRGEHEFLV 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2742 701 SMART REC_2 46 161 IPR001789 GO:0000160
Ssu1g2742 701 MobiDBLite consensus disorder prediction 675 701 - -
Ssu1g2742 701 CDD psREC_PRR 48 151 - -
Ssu1g2742 701 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 17 663 - -
Ssu1g2742 701 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 663 IPR045279 GO:0009736
Ssu1g2742 701 Pfam Response regulator receiver domain 48 159 IPR001789 GO:0000160
Ssu1g2742 701 Gene3D - 44 245 - -
Ssu1g2742 701 SUPERFAMILY CheY-like 46 172 IPR011006 -
Ssu1g2742 701 ProSiteProfiles Response regulatory domain profile. 47 165 IPR001789 GO:0000160
Ssu1g2742 701 MobiDBLite consensus disorder prediction 216 237 - -
Ssu1g2742 701 Pfam CCT motif 627 669 IPR010402 GO:0005515
Ssu1g2742 701 ProSiteProfiles CCT domain profile. 627 669 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2742 Ssu-Chr1 73564793 73569279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2742 609 671 Response Regulator Gene Family AT5G24470 73.846 1.02e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Ssu1g2742 Response_reg 5.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2742 K12130 - gmx:100777119 1172.15