Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2736 ATGGGTTCAACCGGCGAGACTCAGATTACCCCAACCCACGTATCTGACGAAGAGGCAAACCTCTTCGCCATGCAACTAGCCAGCGCCTCTGTCCTCCCCATGGTCCTCAAATCAGCTCTTGAGCTCGATCTCTTGGAAATCATTGCCAAGGCTGGCCCTGGCGTTCACCTTTCCCCCGCTGACATTGCCTCTCAGCTCCCAACACACAACCCCGACGCACCCGTCATGTTGGACCGCATGCTGCGCCTCTTGGCTTGCTACAACATCCTCTCTTTCTCCTTCCGCACTCTCCCCGATGGGAAGGTCGAAAGGCTCTATGGTCTCGCCCCTGTTGCTAAGTACTTGGTCAAGAACGAAGATGGTGTTTCCATCGCTGCTCTTAACCTCATGAACCAGGACAAAGTCCTCATGGAAAGCTGGTACTACTTGAAAGATGCAGTCCTTGAAGGGGGCATTCCATTTAACAAGGCGTATGGAATGACAGCCTTTGAATACCATGGAACAGATCCAAGGTTTAACAAGGTTTTCAACAAGGGGATGTCCGATCACTCTACCATCACAATGAAGAAAATCCTTGAGACCTACACAGGCTTTGAGGGTCTTAAATCTCTGGTTGATGTTGGTGGTGGGACTGGAGCTGTAGTGAACATGATTGTCTCGAAGTATCCCACTATTAAGggcattaattttgatttgccCCATGTCATTGAAGATGCCCCATCTTATCCAGGAGTGGAGCATGTCGGTGGAGATATGTTTGTCAGTGTTCCAAAAGCTGACGCTATTTTTATGAAGTGGATTTGCCACGATTGGAGTGATGAGCACTGCTTGAAGTTTTTGAAGAACTGCTACGAGGCACTGCCAGACAATGGGAAGGTGATTGTGGCGGAATGCATTCTTCCAGTGGCTCCAGACTCTAGCTTGGCCACAAAGGGTGTGGTTCACATCGATGTGATCATGTTGGCTCATAATCCAGGTGGGAAAGAGAGAACAGAGAAAGAGTTTGAGGCTCTGGCCAAAGGGGCAGGATTCCAAGGTTTCCGAGTCCTGTGCTGTGCTTTCAATACATACGTCATGGAATTTCTAAAAAAGGTTTAA 1098 0.4818 MGSTGETQITPTHVSDEEANLFAMQLASASVLPMVLKSALELDLLEIIAKAGPGVHLSPADIASQLPTHNPDAPVMLDRMLRLLACYNILSFSFRTLPDGKVERLYGLAPVAKYLVKNEDGVSIAALNLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVVNMIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEKEFEALAKGAGFQGFRVLCCAFNTYVMEFLKKV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2736 365 Gene3D Vaccinia Virus protein VP39 116 363 IPR029063 -
Ssu1g2736 365 CDD AdoMet_MTases 204 295 - -
Ssu1g2736 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 363 IPR016461 GO:0008168
Ssu1g2736 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 361 IPR029063 -
Ssu1g2736 365 PANTHER BNAA10G07270D PROTEIN 1 364 - -
Ssu1g2736 365 PANTHER O-METHYLTRANSFERASE 1 364 IPR016461 GO:0008168
Ssu1g2736 365 Pfam Dimerisation domain 34 85 IPR012967 GO:0046983
Ssu1g2736 365 PIRSF O-mtase 1 363 IPR016461 GO:0008168
Ssu1g2736 365 SUPERFAMILY "Winged helix" DNA-binding domain 15 119 IPR036390 -
Ssu1g2736 365 Pfam O-methyltransferase domain 140 345 IPR001077 GO:0008171
Ssu1g2736 365 Gene3D - 1 115 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2736 Ssu-Chr1 73418243 73421768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2736 1 365 Monolignol Biosynthesis Gene Families AT5G54160 78.082 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2736 K13066 - gmx:100780100 726.472