Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2733 ATGTCTCCAGGTCCCGTTGTCGACGCTTCCCCTGAGGTTGATACCGAGCAACAAGTTCCCTCTATCGATGACGCAACCCTCAAGAAGAAGCCTCAACCGCAGGAGGACGATGCTCCCGTCGTCGAGGATGTGAAGGATGATGACAAAGACGAAGCTGACgacgacgaagacgatgaggatgatgatgaagatgacaaGGAAGACGGTGCTCAAGGTGCTGGTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAGCAATGTTGAAGCTGGGACTAAAACCTGTTACAGGTGTTAGTAGGGTCACAATCAAGAGGACGAAAAATattctttttttcatctcaaaacCTGATGTCTTCAAGAGTCCAAATTCTGAGACATATGTCATATTTGGGGAGGCAAAAATAGAGGACTTGAGCTCTCAGTTGCAGACACAGGCTGCTCAACAGTTCAGGATGCCAGATGTGGGATCAATAACAGCAAAACAAGATCAAGATGCAGCAGCTGCAGCAGCACAGCCCGAAGAAGAGGAGGAGGTTGATGAAACTGGCGTTGCACCCCATGACATTGATTTGGTGATGACCCAGGCAGGAGTGTCAAGAAGCAAGGCCGTCAAGGCTCTCAAGACTCACGACGGGGACATTGTTGGAGCCATCATGGAGCTCACTACTTAA 681 0.4567 MSPGPVVDASPEVDTEQQVPSIDDATLKKKPQPQEDDAPVVEDVKDDDKDEADDDEDDEDDDEDDKEDGAQGAGEGSKQSRSEKKSRKAMLKLGLKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQTQAAQQFRMPDVGSITAKQDQDAAAAAAQPEEEEEVDETGVAPHDIDLVMTQAGVSRSKAVKALKTHDGDIVGAIMELTT 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2733 226 Gene3D - 187 224 - -
Ssu1g2733 226 MobiDBLite consensus disorder prediction 1 89 - -
Ssu1g2733 226 Pfam HYPK UBA domain 186 225 IPR044034 -
Ssu1g2733 226 CDD UBA_NAC_euk 189 225 - -
Ssu1g2733 226 Gene3D - 89 142 IPR038187 -
Ssu1g2733 226 ProSiteProfiles NAC A/B domain profile. 80 145 IPR002715 -
Ssu1g2733 226 PANTHER NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2 26 225 - -
Ssu1g2733 226 SMART NAC_2 83 139 IPR002715 -
Ssu1g2733 226 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 26 225 IPR016641 GO:0005854
Ssu1g2733 226 MobiDBLite consensus disorder prediction 40 69 - -
Ssu1g2733 226 Pfam NAC domain 83 138 IPR002715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2733 Ssu-Chr1 73393902 73396341 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2733 K03626 - gmx:100780632 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2465 6 58031218 58032240 Ssu1g2733 1 73393902 73396341 PCT