Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2726 ATGGGTTCGGTCGACTGTTATCCGCCGCGTGGGGATGAGGTGGGGGTGGTGTCTCTGAATTCGCTGCCGTTAGGGTTCCGATTCCGACCAACGGACGAGGAACTCATCGATTACTACCTGCGACTCAAGATCAACGGTAAACCTGACGCGGTTTGGGTTATCCGAGAAATCGATGTCTGCAAATGCGAGCCTTGGGACATGCCTGATATGTCGGTGATACGGAACAAGGATCCGGAGTGGTTCTTCTTCTGTCCACAGGACCGTAAGTATCCAAATGGGCATCGATTGAACAGAGCAACGAATCATGGGTATTGGAAGGCAACGGGGAAGGATCGTAGAATCAGGTCTGGGACGAGCTTGATTGGAATGAAGAAGACTTTGGTTTTCTACACTGGTCGTGCTCCCAAAGGGAAGAGGACCAATTGGGTGATGCACGAGTACCGCCCCACCTTGAAGGAGCTTGATGGTACCAATCCTGGACAGAATCCATATGTCCTTTGTCGCTTGTTTAAGAAACAAGATGAGAGCCTTGAAGTTTCGCACTGTGATGAAGCAGAGCAGACTGCTTCAACTCCAATTGCTGCCGATTACTCTCCAGGGGAAATGCAATCTGATCTGGCTGTTAATGCAGTATCCCCGTCACAGGTTACAGAAGATGATAAGCATCGGACAATGATCCCTGCGAACTCTGAGGAAGCAATATCGAACTTTGTAACGCCGGTTGATTCCCATAGTGACGGATATGATGCTTGTGATGCACCAAATCAAATTGTGGCACCAGCTGCAGAGGAGTTTCAGCCATTGGACTTTGACATATATTATGACCCAAGTAACGAGCTATTGGATGACAAATTTTTCTCCCCTGTACTTGCACATATTCAACCAGAATTTCATTATCAAGCAAACATCGAATTAGATAATCAATACGGGCTTCAATATGGTACAAATGAGACAAACATTTCCGACTTTTTGAATTCAGTTGTTAACTGGGATCAAGTACCCTATGAGGAGCCCAATTGTGAACAGCAGAGCTGCCCTTGTTCAACGTTAAGGATAACATATTAG 1065 0.4657 MGSVDCYPPRGDEVGVVSLNSLPLGFRFRPTDEELIDYYLRLKINGKPDAVWVIREIDVCKCEPWDMPDMSVIRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRRIRSGTSLIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKQDESLEVSHCDEAEQTASTPIAADYSPGEMQSDLAVNAVSPSQVTEDDKHRTMIPANSEEAISNFVTPVDSHSDGYDACDAPNQIVAPAAEEFQPLDFDIYYDPSNELLDDKFFSPVLAHIQPEFHYQANIELDNQYGLQYGTNETNISDFLNSVVNWDQVPYEEPNCEQQSCPCSTLRITY 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2726 354 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 17 339 - -
Ssu1g2726 354 SUPERFAMILY NAC domain 18 172 IPR036093 GO:0003677|GO:0006355
Ssu1g2726 354 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Ssu1g2726 354 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 17 339 - -
Ssu1g2726 354 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Ssu1g2726 354 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2726 Ssu-Chr1 73310825 73312859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2726 14 218 NAC Transcription Factor Family AT4G35580 66.829 9.72e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu1g2726 NAM 1.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2726 - - gmx:100777071 614.379