Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2709 ATGGCTCCCAGAAGAACCCAAAAGGTTGTGCAAATGGTAGACAGTACTATTGCAGAAAAAAATGACCGTGATGATGAGCCGAAGAAGAACGTCGTCAAAACTTTACCATTCTTTAAACTCTTGAGCTATGCTGACCTGGTAGACTGGATTCTGATGGTTTTGGGAACTCTAGGTTCGATTGTGCATGGCATGGCACTTCCTGTTGGGTATCTCTTGTTAGGAAAAGCACTTAATGCTTTTGGGAACAATATCCAAGACCGAGATGCCACGGTTAATGCTCTTAAAAAGGTTGTTCCATACGTGTGGTATATGGCCATCGCTACATTCCCTGCTGGGGTACTAGAGATTGGTTGTTGGATGTATGCAAGTGAAAGACAGTTATTGCGGCTAAGATTAGCATATCTAAGAGCAGTTCTCAACCAAGAGATAGGGGCTTTTGATACAGATTTAACAAGTGGAAAAGTCATCAGTGGAATAAGCAAGCACATGAGTGTCATACAAGATGCCATTGGTGAGAAGTTGGGTCACTTCACCTCTAGCTGTGCAACTTTCTTTGCTGGAATTGTGATTGCTGCCATATGCTGTTGGGAAGCGGCACTTCTCTGTTTAGTGGTTGTCccgcttatttttataattggagCAACTTACACCAAGAAAATGAACAGCATATCAACCACCAAAATGCTTTTCCATTCTGAAGCTACATCCATGATAGAGCAGACAATATCACATATAAAAACAGTTTATGCTTTTGTTGGAGAGAGCTCTGCAACCAAATCCTTTACAGAGAACATGGAAAAACAATACGTTATAAGCAAAGGGGAGGCACTTGTGAAGGGAGTTGGGACAGGGATGTTTCAAACTGTGAGTTTCTGTTCTTGGGCTCTCATTATATGGGTTGGAGCTGTTGTGGTCAGAGCCGGAAGAGCATCAGGAGGAGACATAATAGCTGCAGTGATGAGTATTCTCTTTGGTGCCATATCTCTCACTTACGCAGCACCAGACATGCAAATATTCAATCAGGCAAAAGCTGCAGGATATGAAGTTTTTCAAGTGATCCAAAGAAAGCCTCTAATAAGTAATGAATCAGAAGGGAAGATGCCTAGCAAAATTAAAGGTGACATTGACTTGCGAGATGTTCACTTTTCCTACCCATCACGACCAGAGAAACCTATCCTTCAAGGACTGTTCTTGTCAATTCCAGCAGGAAAGACAGTAGCACTAGTTGGTAGCAGTGGCTGTGGAAAGAGCACTGTTATTTCCCTGGTTAGCAGATTTTATGACCCCTCGAGAGgagaaatttttattgatcatTGCAATATCAAGGATCTTGATCTGAAGTTCCTTCGAAGAAATATAGGGGCTGTTTCCCAAGAACCATCACTCTTTGCAGGCACCATCAAGGATAACTTGAAAGTGGGAAAAATGGACGCAGATGATCAAGAGATTCAGAAGGCAGCAGTAATGTCAAATGCACACTCTTTCATATCACAGCTGCCCAATCAGTACCTAACAGAGGTAGGAGAAAGGGGCATCCAATTATCAGGAGGCCAAAAACAGAGAATTGCAATAGCAAGAGCTGTTCTGAAAAATCCTCCCATCCTTTTGCTTGATGAGGCCACTAGTGCCCTTGATTCAGAGTCTGAAAAGCTGGTTCAAGAAGCACTTGAGACAGCTATGCAGGGAAGGACTGTCATCTTGATTGCACACAGGCTCTCAACAGTTGTAAATGCAGATATAATTGCTGTAGTAGAGAATGGACAAGTTGCAGAGACAGGAACACACCAGAGTTTGTTAGACACAAGCAGATTCTATAGTACATTATTCAGTATGCAGAACTTTGAACCAGTTCCTAAATCCAGAGCTACAATTTCCAAGAATAGAAGTGCCCACCAAGAAGATTTTCCTGATGAAACTAGGCCACTCGTAGAGGTGCAGGGAGAGGTCCAAAGAAATATCACTGAGCATTCTGTGCTAAAGGAACAGAACAAAATGAGCAGCagagaaagaaatatatttttcagaatttggtttggtttaaaaaagaGGGAGCTGGTGAAGATTGCTATTGGCTCATTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCATTTTTTGGGTTCTACATCATCACCATTGGAGTAGCATACTTTGACGAAGATGCAAAACGAGAAGTTGGATTTTATTCAGCCATCTTTACTGCAATAGGGTTGCTTTCATTACTCAGCCACACCTTCCAGCATTACTTCTTTGGAGTGGTTGGAGAAAAGGCCATGGAAAATCTCAGACGTGCTTTGTATTCAGGTGTGCTATGTAACGAAGTAGGCTGGTTTGACAAATCTGAGAATACTGTTGGTTCATTGACTTCACGCATTATCAGTGACACTGCCATGGTCAAAGTCATCATTGCTGATCGAATGTCTGTAATTCTGCAATGTGTTTCCTCCATACTGATAGCAACAGTTGTCAGCATGGCTGTCAACTGGAGAATGGGTTTGGTAGCTTGGGGTGTGATGCCCTGCCACTTCATAGGTGGTCTCATTCAAGCCAAGTCTGCCAAAGGATTTTCAGGTGACTACTCTGCTGCACATTCTGAGCTTGTTGCTCTTGCATCTGAGTCTGCAACCAACATAAGGACTATTGCATCATTCTGTCATGAAGAAGAAGTACTGAGGAAAGCCAAAACATGCCTGGAAATTCCAAAGAAAAAGTACAGGAAAGAAAGTATCAAATATGGGATCATTCAAGGCTTCTCCCTTTGCTTGTGGAACATTGCACATGCTGTTGCTTTGTGGTACACAACAATTCTGGTTGACAGACGTCAAGCCACCTTTAAAAATGGAATAAGATCGTACCAAATTTTTTCTCTCACAGTTCCTTCTATCACAGAATTATACACATTGATCCCAACTGTCATATCTGCCATCAATATACTAACCCCAGCATTCAAAACCCTTGACCGTAAAACTGAAATTGAACCAGACACGCCAGATGATTCCCAACCTGAGAGGATCCAAGGAAAtgtagaatttgaaaatgtaaaattcaACTACCCTTCAAGACCCGCAGTCACTGTTCTTGACAATTTCAGTTTACAAATTGAAGCTGGATTGAAGGTGGCTTTTGTAGGACCAAGTGGAGCTGGAAAATCCTCTGTTTTGGCCCTTTTACTAAGATTTTACGATCCACAGGCAGGAAAGGTATTAATTGATGGGAAAGACTTACAGAAATATAATCTAAGATGGTTAAGGACACAAATAGGACTGGTACAACAAGAGCCACTGCTTTTTAATTGCTCGATTAGAGACAATATTTGTTATGGTAATAATGGGGCTTCTGAAAGTGAAATAGTGGAGGTTGCTAAAGAAGCAAACATACATGAATTTGTAAGTAATCTACCAAATGGATATAACACTGTCGTTGGAGAGAAAGGCTGCCAGCTTTCTGGAGGACAAAAGCAAAGAATAGCTATTGCCAGAACCTTACTAAAGAAGCCTGCAATATTACTCCTAGATGAAGCAACAAGTGCTCTTGATGCCGAGTCTGAAAGAATTATAGTAAATGCTTTAAAAGCAATACATCTGAAGGAAGACAGTGGTTTGTGTTCAAGAACCACCCAAATCACAGTAGCTCATAGGCTTTCCACAGTAATAAACTCAGATACTATAATTGTCATGGATAAAGGTAAAGTTGTAGAGATGGGTTCCCACCCAACCCTAATAGCAGCAGAGgcaggactttattcaaggataTTCGGGTTACAGAGCTTTGAAGAAACTTCATAG 3783 0.4052 MAPRRTQKVVQMVDSTIAEKNDRDDEPKKNVVKTLPFFKLLSYADLVDWILMVLGTLGSIVHGMALPVGYLLLGKALNAFGNNIQDRDATVNALKKVVPYVWYMAIATFPAGVLEIGCWMYASERQLLRLRLAYLRAVLNQEIGAFDTDLTSGKVISGISKHMSVIQDAIGEKLGHFTSSCATFFAGIVIAAICCWEAALLCLVVVPLIFIIGATYTKKMNSISTTKMLFHSEATSMIEQTISHIKTVYAFVGESSATKSFTENMEKQYVISKGEALVKGVGTGMFQTVSFCSWALIIWVGAVVVRAGRASGGDIIAAVMSILFGAISLTYAAPDMQIFNQAKAAGYEVFQVIQRKPLISNESEGKMPSKIKGDIDLRDVHFSYPSRPEKPILQGLFLSIPAGKTVALVGSSGCGKSTVISLVSRFYDPSRGEIFIDHCNIKDLDLKFLRRNIGAVSQEPSLFAGTIKDNLKVGKMDADDQEIQKAAVMSNAHSFISQLPNQYLTEVGERGIQLSGGQKQRIAIARAVLKNPPILLLDEATSALDSESEKLVQEALETAMQGRTVILIAHRLSTVVNADIIAVVENGQVAETGTHQSLLDTSRFYSTLFSMQNFEPVPKSRATISKNRSAHQEDFPDETRPLVEVQGEVQRNITEHSVLKEQNKMSSRERNIFFRIWFGLKKRELVKIAIGSFAAAFSGISKPFFGFYIITIGVAYFDEDAKREVGFYSAIFTAIGLLSLLSHTFQHYFFGVVGEKAMENLRRALYSGVLCNEVGWFDKSENTVGSLTSRIISDTAMVKVIIADRMSVILQCVSSILIATVVSMAVNWRMGLVAWGVMPCHFIGGLIQAKSAKGFSGDYSAAHSELVALASESATNIRTIASFCHEEEVLRKAKTCLEIPKKKYRKESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQATFKNGIRSYQIFSLTVPSITELYTLIPTVISAINILTPAFKTLDRKTEIEPDTPDDSQPERIQGNVEFENVKFNYPSRPAVTVLDNFSLQIEAGLKVAFVGPSGAGKSSVLALLLRFYDPQAGKVLIDGKDLQKYNLRWLRTQIGLVQQEPLLFNCSIRDNICYGNNGASESEIVEVAKEANIHEFVSNLPNGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERIIVNALKAIHLKEDSGLCSRTTQITVAHRLSTVINSDTIIVMDKGKVVEMGSHPTLIAAEAGLYSRIFGLQSFEETS 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2709 1260 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524
Ssu1g2709 1260 CDD ABC_MTABC3_MDL1_MDL2 375 612 - -
Ssu1g2709 1260 Gene3D ABC transporter type 1, transmembrane domain 39 969 IPR036640 GO:0005524|GO:0016021
Ssu1g2709 1260 SMART AAA_5 1035 1229 IPR003593 -
Ssu1g2709 1260 SMART AAA_5 402 594 IPR003593 -
Ssu1g2709 1260 ProSitePatterns ABC transporters family signature. 514 528 IPR017871 GO:0005524
Ssu1g2709 1260 CDD ABC_6TM_Pgp_ABCB1_D2_like 678 991 - -
Ssu1g2709 1260 PANTHER OS08G0153200 PROTEIN 27 1255 - -
Ssu1g2709 1260 SUPERFAMILY ABC transporter transmembrane region 681 994 IPR036640 GO:0005524|GO:0016021
Ssu1g2709 1260 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 375 611 IPR003439 GO:0005524
Ssu1g2709 1260 Pfam ABC transporter 1026 1175 IPR003439 GO:0005524
Ssu1g2709 1260 Gene3D - 365 613 IPR027417 -
Ssu1g2709 1260 CDD ABC_MTABC3_MDL1_MDL2 1008 1247 - -
Ssu1g2709 1260 CDD ABC_6TM_Pgp_ABCB1_D1_like 52 349 - -
Ssu1g2709 1260 SUPERFAMILY ABC transporter transmembrane region 39 357 IPR036640 GO:0005524|GO:0016021
Ssu1g2709 1260 Gene3D - 998 1259 IPR027417 -
Ssu1g2709 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 612 IPR027417 -
Ssu1g2709 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1254 IPR027417 -
Ssu1g2709 1260 Pfam ABC transporter transmembrane region 52 326 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu1g2709 1260 Pfam ABC transporter transmembrane region 690 952 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu1g2709 1260 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 689 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu1g2709 1260 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1008 1252 IPR003439 GO:0005524
Ssu1g2709 1260 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 27 1255 IPR039421 -
Ssu1g2709 1260 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 53 341 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu1g2709 1260 Pfam ABC transporter 394 542 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2709 Ssu-Chr1 73062825 73073869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2709 25 1259 Calmodulin-binding Proteins AT2G36910 41.186 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2709 K05658 - zju:107414909 1834.31