Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2706 ATGGAGACTCTGAAAGCTGCGATTCCAGAAGGCCTGAAGCGAGCGATAGCGGATAGCACTGTCGATGATCTTCCCGGCACGTGTTCTTCTCTTCACAGCTTCTTTCTCCAGTTCGACCCATTCCAGCAGATAATCACTGAACTGGCGGATCCACAGTATGCTCTGTGCGGTAAGAGTAAGGACGATGCGTTGAAATCCAAGCAGCTTGGCAATCAATGCTTCTCCAACGCAGATTATGCAAAGGCCTTGGAGTGCTATACTcagGCACTGTGCAAGGCTCCGTTAGACACTGGTGACATGGAAAGTAATCTTGTCGCAATACTATATATCAATCGTGCTACTGTATTACATAAAATGAGTCTTTTAGTAGAATGTTTGCGAGATTGCACTCGAGCTCTTCAGATTTGTCCAAGCTATGCAAAGGCATGGTACAGGAGAGGTAAGGCAAATGCTTCATtgggaaattataaaaatgcaatCTGCGACCTAAATGTGGCTACGAGTGTGGAACCTTCAATGGGCGGGAAGAGACAAATAGAAGgggaattgaaaattattttagaccGATGCAAGAGCACAAGTGTGGTAGTACAGATACAGCATAAGGAGAACAGCTGCAATACTGAGGGTGAGATTCCCCAAATAAAGCTGCAGTGTGTTTCCATGCCTGATAAAGGAAGAGGCATGGTGTCATCATGTGTCATTTCACCAGGTTCTTTGGTTCATACTGAAGAACCTTATGCTATGATAATATTAAAGCAGTGTCGGGAAACTCATTGCCATTATTGCTTGAATGACCTACCTGCTGATAGAGTTCCTTGTATATCATGTTCAATACCATTGTACTGCTCCCACCAATGCCAGATACGGGCAGGAGGGCAAATGTTCAGGATTTACCCAGaaaataatagcatttttaaaaacttaccCAGTGATCTTGGAGAATATGCTGCTGAAGTTATTCAATGCAATGATTCTGAACAAGAAATTGAGGATATTACTGAACATAAACATGAATGTCAAGGTGTACATTGGCCTGTGGTATTGCCGTCTGAGATAGTTTTGGCTGGCCGAATACTAGCAAGGTTTTTGCTGAATAGCACATCTgaagatattataaactttgTGAAAAGGCTGGAGCTTTCTCATTGTTACAAGCATATGCCACCTGAAAGCAAATTGGATTCACATATATATGCCATTGTACTATTATATTGTCTTCAACACTCTGCTGGAACTATGTTTTCCATAGATGAAGTCTCCATTTCACAGGTTGTCATaattatttctcaaattaaagTGAATTGTATGACCATTGTTCGTTTAAAATCAATGGATGCTCATGGACTATCAGGTCATTTTGGAGAATTTCCATTTCAATCTGGCGCACATTTAACTAGTAATGTGGAACAGGTCAGAGTGGGTAAAGCTATTTATAAAGCTGGCAGTTCATTCAACCATTCTTGCCAACCAAATGTTCATGCATATTTTCTTTCACGCACTCTTTATTTACGAGCCACTAAAGTTGTAGCAGCTGGGTGTCAGCTAGAATTATCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCCTTAATTTTCTCAAAGATGAGTATGCGTTTCATTGTCAGTGTACTGGTTGTTCAGAAGTTAATCTATCTGACATTGTCCTCAATGCCTTCCATTGTGTCAATCCAAATTGTTCTGGTGCAGTGTTGGAAAGCAGAGTACTTGACTGTGAAGAGCAGAAAATCAAGCACTTCCCTATTACTGACAATGTTGACAAGAATGATGACATCTATAGCGTATGTCTTCGTGTTTTCAAACAAAATGGTGCCTCTATTCATATTCAACCTGGATACTGTTTGAAATGTGGTTCTTGCTGTGACTTGGAGTCTTCACATGCTGCAGTCAGTAAAGCTTTAATATGCATAAAAAGGTTGCAGGATGCAATATTGTCAAAAGAAATTTCAAGTATTACTATTTCTGATGCTTTGAGATCACTTCATTTGCTAAGATTAAATTTGCATGCATACAACAAGCTTATTGCAGAGGCAGAAGACAACATTGCCCAGGCTTTTTGTTTAGTGGGAGAATTACAATTATCAGTGGATCATTGTAAAGCATCTATCCAgATTCTGGAGAAGCTATATGATACCGATGATATTGTTATTGCTTATGAACTTGTGAAGCTTTCTTCCATCCAACTTTCGTTGGATGATGGTACTGCTGTGGACAGCATAAGTCGAATAGATGATATCTTCTCACGTTATTATGGACTTCATGCAGACTTGGTCTTCCCTTATCTTCAATACCTTAGGAGAGAAATTGAGAAATTTTCAGTGAAGGCTCTCCAATAA 2364 0.3875 METLKAAIPEGLKRAIADSTVDDLPGTCSSLHSFFLQFDPFQQIITELADPQYALCGKSKDDALKSKQLGNQCFSNADYAKALECYTQALCKAPLDTGDMESNLVAILYINRATVLHKMSLLVECLRDCTRALQICPSYAKAWYRRGKANASLGNYKNAICDLNVATSVEPSMGGKRQIEGELKIILDRCKSTSVVVQIQHKENSCNTEGEIPQIKLQCVSMPDKGRGMVSSCVISPGSLVHTEEPYAMIILKQCRETHCHYCLNDLPADRVPCISCSIPLYCSHQCQIRAGGQMFRIYPENNSIFKNLPSDLGEYAAEVIQCNDSEQEIEDITEHKHECQGVHWPVVLPSEIVLAGRILARFLLNSTSEDIINFVKRLELSHCYKHMPPESKLDSHIYAIVLLYCLQHSAGTMFSIDEVSISQVVIIISQIKVNCMTIVRLKSMDAHGLSGHFGEFPFQSGAHLTSNVEQVRVGKAIYKAGSSFNHSCQPNVHAYFLSRTLYLRATKVVAAGCQLELSYGPQVGLWDCKDRLNFLKDEYAFHCQCTGCSEVNLSDIVLNAFHCVNPNCSGAVLESRVLDCEEQKIKHFPITDNVDKNDDIYSVCLRVFKQNGASIHIQPGYCLKCGSCCDLESSHAAVSKALICIKRLQDAILSKEISSITISDALRSLHLLRLNLHAYNKLIAEAEDNIAQAFCLVGELQLSVDHCKASIQILEKLYDTDDIVIAYELVKLSSIQLSLDDGTAVDSISRIDDIFSRYYGLHADLVFPYLQYLRREIEKFSVKALQ 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2706 787 SUPERFAMILY TPR-like 62 715 IPR011990 GO:0005515
Ssu1g2706 787 SUPERFAMILY SET domain 219 546 IPR046341 -
Ssu1g2706 787 ProSiteProfiles TPR repeat profile. 140 173 IPR019734 GO:0005515
Ssu1g2706 787 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 777 - -
Ssu1g2706 787 Pfam SET domain 226 521 IPR001214 GO:0005515
Ssu1g2706 787 Gene3D Tetratricopeptide repeat domain 526 781 IPR011990 GO:0005515
Ssu1g2706 787 SMART tpr_5 140 173 IPR019734 GO:0005515
Ssu1g2706 787 SMART tpr_5 685 718 IPR019734 GO:0005515
Ssu1g2706 787 SMART tpr_5 106 139 IPR019734 GO:0005515
Ssu1g2706 787 SMART tpr_5 63 96 IPR019734 GO:0005515
Ssu1g2706 787 Gene3D Tetratricopeptide repeat domain 39 192 IPR011990 GO:0005515
Ssu1g2706 787 Gene3D SET domain 412 520 IPR046341 -
Ssu1g2706 787 ProSiteProfiles SET domain profile. 213 521 IPR001214 GO:0005515
Ssu1g2706 787 Coils Coil 670 690 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu1g2706 SET 3.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2706 K24634 - gmx:100783548 1400.57