Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2697 ATGGAGGCACTGTTGTGCAGAAAACTGGGTGATCCAACGGTGTGTTTGGAAGACAACGATAGCCCAATAGTTTTGTCAAAGAATCACCCAATTCCCCAACTCAATTCTCCTACCGCTGTAAGAGTCAGAATCAGAGCCACAAGCTTGAACTTCGCCAATTACTTGCAGATATTGGGCAAGTACCAAGAGAAATCCCCTTTGCCCTTCATCCCCGGCTCCGATTTTTCCGGCTACGTCGACGCCGTCGGCCCCAAAGTGTCCAACTTCCGAGTCGGAGACGCCGTTTGTTCCTTCGCCGGCCTCGGCTCCTTCGCCCAGTTCATCGTCGTTGACGAGTCCCAATTGTTTCGAGTGCCCCAAGGTTGTGACCTTGTTGCTGCTGGAGCACTTGCTGTGGCGTTTGGCACTTCTCATGTGGCACTCGTCCATAGGGCTCATTTGACCTCCGGTCAGGTGTTGTTGGTTTTAGGTGCAGCTGGAGGTGTGGGTCTTGCTGCTGTGCAAATTGGAAAAGCATGTGGGGCTATTGTCATTGCTGTTGCTAGGGGAGCTGAAAAGGTGCAGCTCTTGAAATCTCTTGGTGTTGATCATGTGGTGGACTTGAGTAATGAAAATGTTACTCAGAGTGTCAAACAGTTCCTTCAGGCCAGAAGGCTTAAGGGGATTGATGTCCTGTATGACCCGGTTGGAGGCAAGCTCACTAAAGAATCTTTGCGGCTTCTGAAATGGGGAGCTAACATTCTCGTAATTGGGTTTGCAAGTGGAGAAATTCCTGTCATCCCTGCTAACATAGCTCTTGTTAAGAATTGGACAGTGCACGGCCTTTACTGGGGTAGCTATAAAATACACCGCCCAGGTGTTCTCGAAGATTCTATCAAGGAGCTACTGTCTTGGTTGGCAAGAGGCTTGATTTCCATCCATATTTCTCATTCTTACTGCTTGTCAGAGGCCAACCTCGCCTTTTCTGCCATCAAAGATAGGAAAGCTATTGGGAAGGTGACGATTGTTTTTGATGAGAAACTTACAAGATCTAAGCTGTGA 1041 0.4861 MEALLCRKLGDPTVCLEDNDSPIVLSKNHPIPQLNSPTAVRVRIRATSLNFANYLQILGKYQEKSPLPFIPGSDFSGYVDAVGPKVSNFRVGDAVCSFAGLGSFAQFIVVDESQLFRVPQGCDLVAAGALAVAFGTSHVALVHRAHLTSGQVLLVLGAAGGVGLAAVQIGKACGAIVIAVARGAEKVQLLKSLGVDHVVDLSNENVTQSVKQFLQARRLKGIDVLYDPVGGKLTKESLRLLKWGANILVIGFASGEIPVIPANIALVKNWTVHGLYWGSYKIHRPGVLEDSIKELLSWLARGLISIHISHSYCLSEANLAFSAIKDRKAIGKVTIVFDEKLTRSKL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2697 346 Pfam Zinc-binding dehydrogenase 161 300 IPR013149 -
Ssu1g2697 346 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 336 - -
Ssu1g2697 346 SUPERFAMILY GroES-like 27 151 IPR011032 -
Ssu1g2697 346 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 150 171 IPR002364 GO:0008270|GO:0016491
Ssu1g2697 346 Gene3D - 32 331 - -
Ssu1g2697 346 PANTHER QUINONE OXIDOREDUCTASE-LIKE PROTEIN 2 1 336 - -
Ssu1g2697 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 122 285 IPR036291 -
Ssu1g2697 346 CDD QOR1 1 335 - -
Ssu1g2697 346 SMART PKS_ER_names_mod 17 335 IPR020843 GO:0016491
Ssu1g2697 346 Pfam Alcohol dehydrogenase GroES-like domain 38 97 IPR013154 -
Ssu1g2697 346 Gene3D - 133 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2697 Ssu-Chr1 72933988 72938789 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2697 65 266 Monolignol Biosynthesis Gene Families AT1G72680 25.941 6.32e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2697 K00344 - gmx:100817700 608.986