Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2695 ATGGAATCGTCaccgtcgtcgtcgtcgtcatcTTCTGGAAGCGAAACCAGCGGTGGCGCTGTCACGTGGTTCGGGATGACTTTCCCGTTCCGTTCTCCGCTCTCTCTCGTAATGGATTACTGCGCGCGCGAGGATTCCGCGGAGCCTGTGATAATCATTCCCCGCACGCGCCCTCGCTTTCAGCCTGAATCTGCTTCTGCTTCTGCCGCTGATTCTGATGACAATGCCTGCAACGGTAACGAGGAGGTTGCGATACGCATAATTGGGGCTGGCGAGCAGGAGAGCGCGTCGTCGTCGCCGTCCTCATCGTCGTCGTCGAGGGGCCGGGTTGGGGAGCCGGGCTGCGAGGAGGCGGTGATTGGGAGGAACGGGATGCTGTCGTCGGAGGCTCGCCGGCGAATGGCGGAGGAGAGGGTTCCGTTGGTGTCGTTGGATGATGGGATTGGTGGTGGTAGGGATTCTTCTTCAACGTCCTCTACCTACCAGAGGTATGATATTCAGCAGGTTGCGAAGTGGATTGAGCAGATTCTGCCGTTCTCGCTCTTGTTGCTGATTGTTTTCATCCGCCAGCATTTGCAAGGTTTCTTTGTCACAATTTGTATATCAGCTGTGATGTTCAAGTCAAATGAAGTTGTTAAGAAGCAGACAACCCTGAAGGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTATGCTGCATGTGATATGCATTTACTGGTGGTATCGAAATGATGAGCTTTTATACCCACTGGCCATGCTTCCTCCAAAAGCAACACCACCTTTCTGGCACACAATATTCATCATTTTGGTTAATGATACATTGGTGCGACAAGCGGCAATGGCTTTCAAGTGTTTGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgGTCAAATGTTAACTCTGGTTGAGTACACTCTGCTGCTGTATCGTGCATTATTGCCAACACCTGTTTGGTACCGATTTTTCTTGAACAAGGATTATGGAAGTCTCTTTTCCTCACTGACCACAGGATTGTATCTAACTTTTAAGCTAACATCAGTAGTTGAGAAgGTCCAATGTTTTGTTTCTGCCTTAAAAGCATTATCGAAAAAGGAAGTTCATTATGGGGTTTATGCCACAACGGAGCAGGTGAATGCTGCTGGTGACATGTGCGCTATATGCCAGGAGAAGATGCAGGCTCCCATATTGTTGAGTTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGGTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTGAAACCGGCTGATCTGCGGACCTTTGGAGATGGATCAACAAGTCTGTTTTTTCAGTTGTTTTAA 1368 0.4751 MESSPSSSSSSSGSETSGGAVTWFGMTFPFRSPLSLVMDYCAREDSAEPVIIIPRTRPRFQPESASASAADSDDNACNGNEEVAIRIIGAGEQESASSSPSSSSSSRGRVGEPGCEEAVIGRNGMLSSEARRRMAEERVPLVSLDDGIGGGRDSSSTSSTYQRYDIQQVAKWIEQILPFSLLLLIVFIRQHLQGFFVTICISAVMFKSNEVVKKQTTLKGDRKVSVLLGISFAFMLHVICIYWWYRNDELLYPLAMLPPKATPPFWHTIFIILVNDTLVRQAAMAFKCLLLIYYKNGRGHNFRRQGQMLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFVSALKALSKKEVHYGVYATTEQVNAAGDMCAICQEKMQAPILLSCKHMFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2695 455 ProSiteProfiles Zinc finger RING-type profile. 394 432 IPR001841 -
Ssu1g2695 455 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 455 - -
Ssu1g2695 455 SMART ring_2 394 431 IPR001841 -
Ssu1g2695 455 MobiDBLite consensus disorder prediction 91 114 - -
Ssu1g2695 455 SUPERFAMILY RING/U-box 385 437 - -
Ssu1g2695 455 MobiDBLite consensus disorder prediction 61 75 - -
Ssu1g2695 455 MobiDBLite consensus disorder prediction 54 77 - -
Ssu1g2695 455 CDD RING-HC_RNFT1_like 393 432 - -
Ssu1g2695 455 ProSitePatterns Zinc finger RING-type signature. 409 418 IPR017907 -
Ssu1g2695 455 MobiDBLite consensus disorder prediction 92 109 - -
Ssu1g2695 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 442 IPR013083 -
Ssu1g2695 455 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 3 455 IPR044235 GO:0061630|GO:1904294
Ssu1g2695 455 Pfam Zinc finger, C3HC4 type (RING finger) 392 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2695 Ssu-Chr1 72888386 72896987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2695 1 455 C3H Transcription Factor Family AT5G01960 61.438 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2695 - K22379 gmx:100784614 784.252