Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2693 ATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCATTTGGAAAGCCACAGGGTACATGTGCTAGAGTGGCCATTGGTCAGGTCCTTCTTTCTGTCCGCTGCAAGGACAGCAACAGTCATCATGCACAGGAGGCCCTTCGACGTGCTAAGTTTAAGTTCCCTGGTCGTCAGAAGATCATAGTTAGCAGGAAATGGGGTTTCACCAAGTTTAGCCGTGCTGATTATCTAAAGTACAAGTCAGAGAACAGGATTGTGCCTGATGGTGTGAATGCAAAGCTACTTGGGTGCCATGGACCACTGGCAAACCGTGAACCTGGACGAGCTTTTTTGCCTACTAGTGCTACTGCTTAG 366 0.4918 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKYKSENRIVPDGVNAKLLGCHGPLANREPGRAFLPTSATA 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2693 121 Pfam Ribosomal protein L16p/L10e 5 65 IPR016180 GO:0003735|GO:0005840|GO:0006412
Ssu1g2693 121 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 117 - -
Ssu1g2693 121 SUPERFAMILY Ribosomal protein L16p/L10e 1 72 IPR036920 GO:0003735|GO:0005840|GO:0006412
Ssu1g2693 121 CDD Ribosomal_L16_L10e 10 65 IPR016180 GO:0003735|GO:0005840|GO:0006412
Ssu1g2693 121 PANTHER 60S RIBOSOMAL PROTEIN L10 1 117 IPR001197 GO:0003735|GO:0005840|GO:0006412
Ssu1g2693 121 Gene3D - 78 113 - -
Ssu1g2693 121 ProSitePatterns Ribosomal protein L10e signature. 7 28 IPR018255 GO:0003735|GO:0005840|GO:0006412
Ssu1g2693 121 Gene3D Ribosomal protein L10e/L16 1 77 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2693 Ssu-Chr1 72870133 72871062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2693 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 84.874 2.46e-72 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2693 K02866 - cpap:110823731 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2564 6 60417656 60418717 Ssu1g2693 1 72870133 72871062 PCT