Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2691 ATGAAGTTGCAGTTCTCTATTGTTGCACTTGTTCTATTTGGCTCCACACTCTCTCCCTTTGGCCTGATTGTAGCTGACTTGAACTCTGACCAACAAGCTCTCTTGGAGTTTGCTTCTAGTGTCCCACATGCCCCAAGGCTCAACTGGAAGAATGACTCTGCTTCAATTTGCACCTCGTGGATTGGTGTGACATGCAACTCAAATGGCACACGTGTAATAGGCCTCCACCTTCCAGGAATGGGATTAACTGGCTCCATTCCAGAGAACAGCATAGGAAAACTAGATGCTCTTAGAGTCCTGAGTCTTCATTCCAATGGCCTTAGAGGAAATCTTCCTTCTAAAATCCTCTCCATTCCTTCACTCCAATTTGCATACCTGCAGCACAATAACTTCTCCGGCCTAATTCCTTCTCCTGTGTCCCCTAAACTCGTTGCATTGGATATTTCCTTTAACTCCTTCTCTGGCAGCATACCACCTGCATTTCAGAACCTTAGAAGACTCACCTGGTTTTATCTCCAACACAATTCCATATCTGGAGCTATTCCTGACTTCAACCttccaagtttaaaatatttgaacttgAGCTATAATAACTTGAATGGCTCAATTCCAAATTCCATGAAGACATTCCCTTCCACTTCTTTTGTTGGGAACTCTCTCTTATGTGGGCCACCTCTCAATCATTGCTCTACAATCTCCCCTTCTCCATCTCCTTCCACTGATTACCAGCCACTCACTCCACCAACCACTCAAAACCAAAAAGCTACTAACCATAAGAAAAACTTTGGCCTAGCTACTATACTTGCTCTAGTCATTGGGGTCATTGCCTTCCTCTCTCTACTAGTTGTAGTGATCTGTGTGTGCTGtttgaagaggaagaaaaacaGTAAAAGCACTGGCATACTGAAAGGAAAGGCTTCTTGTGCTGGAAAGACTGAGGTTTCGAAGAGTTTTGGGAGTGGAGTGCAAGGGGCTGAAAAGAACACGCTATTTTTCTTCGAAGGTTCCTCTACTAGCTTTGACCTTGAGGATTTACTGAAGGCTTCAGCTGAAGTTCTTGGAAAAGGAAGTTATGGAACAGCATACAAGGCTGTTTTGGAGGAGGGTACAACAGTGGTAGTTAAAAGGTTGAAGGAAGTTGTGGTTGGCAAGAAGGAGTTTGAGCAGCAGTTGGAGATTGTGGGGAGAACTGGTCGCCACCCCAATGTGATGCCCCTCAGGGCTTATTACTATTCCAAAGATGAGAAACTTCTGGTGTACAACTACATGCCAGGTGGCAGCTTGTTTTTCTTGTTGCATGGAAGCAGGGGTGCAGGAAGAACCCCACTAGACTGGGATTCCAGAGTGAAGATTTTGCTTGGAGCTGCCAAGGGAATTGCTTTCATTCACACTGAGGGGGGTCCAAAATTCACACATGGCAACATCAAGTCAACCAATGTGCTCATAACCCAAGAACTTGACAGCTGCATCTCTGATGTTGGGTTGCCTCCTCTTATGAACACCCCAGCAACCATGGCTAGAGCCAATGGCTATAGAGCCCCAGAAGTCACTGACTCAAGGAAGATCACTCAGAAGTCTGATGTTTACAGCTTTGGTGTGCTGCTTCTTGAAATGCTGACAGGGAAGACCCCACTGAGATATCCAGGTTATGAGGATGTGGTTGATCTTCCAAGGTGGGTGAGGTCTGTTGTCAGAGAGGAATGGACTGCTGAAGTGTTTGATGAGGAGCTTCTGAGAGGGCAATATGTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCATTGGCCTGTGTAGCCAAGGGGCCAGATAATAGGCCTAGAATGGATGAAGTTGTTAGAATGATAGAGGAAATTAAGCAGCCTGAGTTGAAGAACCGGCCATCCTCTGAGTCTGAGTCTAATGTGCAGACACCATGA 1917 0.4486 MKLQFSIVALVLFGSTLSPFGLIVADLNSDQQALLEFASSVPHAPRLNWKNDSASICTSWIGVTCNSNGTRVIGLHLPGMGLTGSIPENSIGKLDALRVLSLHSNGLRGNLPSKILSIPSLQFAYLQHNNFSGLIPSPVSPKLVALDISFNSFSGSIPPAFQNLRRLTWFYLQHNSISGAIPDFNLPSLKYLNLSYNNLNGSIPNSMKTFPSTSFVGNSLLCGPPLNHCSTISPSPSPSTDYQPLTPPTTQNQKATNHKKNFGLATILALVIGVIAFLSLLVVVICVCCLKRKKNSKSTGILKGKASCAGKTEVSKSFGSGVQGAEKNTLFFFEGSSTSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTVVVKRLKEVVVGKKEFEQQLEIVGRTGRHPNVMPLRAYYYSKDEKLLVYNYMPGGSLFFLLHGSRGAGRTPLDWDSRVKILLGAAKGIAFIHTEGGPKFTHGNIKSTNVLITQELDSCISDVGLPPLMNTPATMARANGYRAPEVTDSRKITQKSDVYSFGVLLLEMLTGKTPLRYPGYEDVVDLPRWVRSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALACVAKGPDNRPRMDEVVRMIEEIKQPELKNRPSSESESNVQTP 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2691 638 Gene3D Phosphorylase Kinase; domain 1 313 422 - -
Ssu1g2691 638 Pfam Protein kinase domain 351 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2691 638 SUPERFAMILY L domain-like 34 227 - -
Ssu1g2691 638 SUPERFAMILY Protein kinase-like (PK-like) 351 616 IPR011009 -
Ssu1g2691 638 ProSitePatterns Protein kinases ATP-binding region signature. 353 384 IPR017441 GO:0005524
Ssu1g2691 638 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515
Ssu1g2691 638 Pfam Leucine Rich Repeat 188 208 IPR001611 GO:0005515
Ssu1g2691 638 MobiDBLite consensus disorder prediction 233 255 - -
Ssu1g2691 638 PANTHER RECEPTOR-LIKE KINASE 3 637 - -
Ssu1g2691 638 Gene3D Transferase(Phosphotransferase) domain 1 423 636 - -
Ssu1g2691 638 CDD STKc_IRAK 353 618 - -
Ssu1g2691 638 Gene3D Ribonuclease Inhibitor 141 231 IPR032675 -
Ssu1g2691 638 ProSiteProfiles Leucine-rich repeat profile. 188 210 IPR001611 GO:0005515
Ssu1g2691 638 MobiDBLite consensus disorder prediction 618 638 - -
Ssu1g2691 638 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Ssu1g2691 638 PANTHER OS05G0588300 PROTEIN 3 637 - -
Ssu1g2691 638 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Ssu1g2691 638 ProSiteProfiles Protein kinase domain profile. 347 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2691 Ssu-Chr1 72853614 72856283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2691 3 636 Receptor kinase-like Gene Family AT5G58300 59.750 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu1g2691 Pkinase 1.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2691 - - gmx:100818444 1130.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2563 6 60316414 60318901 Ssu1g2691 1 72853614 72856283 PCT