Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2684 ATGAAACGAGTGACCGGTACTATTTTCCTCTCCAATTTGGGGAGAGAGTGGTTGGGTTCGATGGAGAAGGAGTTGGTGGAATTGTACGAAGCCGCGAAAAAGGCGGCGGATGCGGCGCTCTCCGGCGACGCCGAGCACGAGGAGAGCCGATGTATCGATGCGCTCGAGCAGCTCAAGAAATTTCCCGTCAATTATAAGATTCTCGTCAACACCCAgGTGGGCAAACATCTTAAAGTTCTGACAAAGCACTCAAGACAGAAAATTCGGTCCTTTGCTATTGACCTAATTGAGATATGGAAAGGAATAATTATCAAGGaaacaagcaaaaataaaaatgggggCTCTGATAGTAAGGTTGAGTCAGCTAATGGGGAGAGAGCTAATGCTGGGAAAATGCAAAAGAGTCCTTCGGTGAAGGTTGAAAAAGGTGAAACTGTCAAGGTTGAGAAAATTGATAGGAATGGTACATCAAAGTCAAGctcagaaaatataaaaaagatgcAAAATGTTGATGTTAAGAATGAGAAAACTGATCGTGCTGCAAGTGTCAAGGTGGAAAAGATATCCAAGGAGGAAAAGCCAGTTTCTGGAGCAAAGAAAATGTCATCCAGTTCTGCCACTCCCCCAAAGCTGAAGACTATGATTAAATCTAATGATGCAGCACGAGACAAAATAAGGGAACTTCTCCATGAGGCTTTATCCAAGGTCACTGGAGAGGCTGATGAAGATATTGCAGATGAAGTCAATGCTTGCGATCCTATTCGTGTTGCTGTGACAGTGGAGTctgtattatttgaaaaatgggGTCCTTCAAATGGGGCGCAAAAGGTCAAGTATAGGTCCTTAATGTTTAATCTTAAGGATTCAAATAACCCTGATTTCCGGAGAAAAGTTCTGCTTGGTGTTGTTGAGCCAGAGCGGCTGATCAACATGAGCACAGCAGAAATGGCTAGTGAGCAAAGGAAGCAGGAAAATCAGAAAATCACAGAGAAAGCTTTGTTTGACTGTGAGCGTGGAGCTCAACCAAAAGCTACAACCGATCAATTTAAGTGTGGCCGATGTGGTCAAAGAAAGTGCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCCATGACAACCTATGTCACTTGTGTTGTCTGCAATAACCGTTGGAAGTTCTGTTAG 1170 0.4179 MKRVTGTIFLSNLGREWLGSMEKELVELYEAAKKAADAALSGDAEHEESRCIDALEQLKKFPVNYKILVNTQVGKHLKVLTKHSRQKIRSFAIDLIEIWKGIIIKETSKNKNGGSDSKVESANGERANAGKMQKSPSVKVEKGETVKVEKIDRNGTSKSSSENIKKMQNVDVKNEKTDRAASVKVEKISKEEKPVSGAKKMSSSSATPPKLKTMIKSNDAARDKIRELLHEALSKVTGEADEDIADEVNACDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDSNNPDFRRKVLLGVVEPERLINMSTAEMASEQRKQENQKITEKALFDCERGAQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVVCNNRWKFC 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2684 389 Pfam Transcription factor S-II (TFIIS) 349 387 IPR001222 GO:0003676|GO:0006351|GO:0008270
Ssu1g2684 389 MobiDBLite consensus disorder prediction 110 211 - -
Ssu1g2684 389 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 21 389 - -
Ssu1g2684 389 SMART mid_6 219 327 IPR003618 GO:0006351
Ssu1g2684 389 MobiDBLite consensus disorder prediction 168 197 - -
Ssu1g2684 389 TIGRFAM TFSII: transcription elongation factor S-II 33 389 IPR006289 GO:0003676|GO:0005634|GO:0006368
Ssu1g2684 389 SMART Cys4_2 349 388 IPR001222 GO:0003676|GO:0006351|GO:0008270
Ssu1g2684 389 SUPERFAMILY Elongation factor TFIIS domain 2 206 319 IPR036575 GO:0006351
Ssu1g2684 389 ProSitePatterns Zinc finger TFIIS-type signature. 351 386 IPR001222 GO:0003676|GO:0006351|GO:0008270
Ssu1g2684 389 ProSiteProfiles Zinc finger TFIIS-type profile. 347 387 IPR001222 GO:0003676|GO:0006351|GO:0008270
Ssu1g2684 389 ProSiteProfiles TFIIS N-terminal domain profile. 27 106 IPR017923 -
Ssu1g2684 389 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 30 118 IPR035441 -
Ssu1g2684 389 MobiDBLite consensus disorder prediction 137 156 - -
Ssu1g2684 389 CDD TFIIS_I 43 103 - -
Ssu1g2684 389 SUPERFAMILY Zinc beta-ribbon 328 387 - -
Ssu1g2684 389 PIRSF TFIIS 21 389 IPR035100 -
Ssu1g2684 389 Pfam Transcription factor S-II (TFIIS), central domain 218 335 IPR003618 GO:0006351
Ssu1g2684 389 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 21 389 - -
Ssu1g2684 389 Coils Coil 211 231 - -
Ssu1g2684 389 CDD Zn-ribbon_TFIIS 342 388 - -
Ssu1g2684 389 Pfam TFIIS helical bundle-like domain 54 103 IPR017923 -
Ssu1g2684 389 SMART TFS2_5 28 105 IPR003617 GO:0005634
Ssu1g2684 389 Gene3D - 318 389 - -
Ssu1g2684 389 Gene3D - 198 317 IPR036575 GO:0006351
Ssu1g2684 389 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 18 118 IPR035441 -
Ssu1g2684 389 ProSiteProfiles TFIIS central domain profile. 221 344 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2684 Ssu-Chr1 72739784 72745172 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ssu1g2684 TFIIS_M 5.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2684 K03145 - gmx:100811982 664.455