Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2682 ATGAGTACTCTCTGCCCTCCAAGTTCCTCAAAGAGGAAACGGGTCATTAGAGAGCTGGTTCAGGGTCAGGACTACGCCGCTCAGCTCAAGTTCCTCCTTCAGAAGCCTATTGGGCCTGATGGGTCCGTTTCAGCCAAGGAGCTCATCTCGAATGTGCTGAGATCTTTCGCGGAAACTCTTTCTGTTTTGACCTCTTCCGAGGCTGCAAGTGGCGACGACGAGGTTGCTCAGAATCTCGTGGCTTCCGCAGAAGAGGTGGCGGCTTCCAGCATTGATCCGAGGTCCGAGGATTCCACTGAGAGTAGGAAGAGATCCTTGTCCCTCACGAAGGATCGGAGAGGCTCCTACAAAAGAAGGAGGACTGAACAGACATCGAACATAGTTTCCCCAACTACTGATGATGATCATGCATGGAGAAAGTACGGACAAAAGGAAATCCTAAATTCTCAATTTCCCAGGAGTTACTTCAGGTGCACTCGGAAGTTCGAACAAGGTTGCCGAGCAACCAAACAGGTGCAACGGATACAAGAGAATCCTGATATGTATAATATTACGTACATTGGCCTTCACACGTGCAAAGACACCCTCAAGGCTCCACAAATGGTCACATATTCAGAAACTTGGGACTCATTTCTTAAGAATTCCCATCCTGACTCAAATGTGCCAAATGAACAACATGATCCCCCTATTAGATCACAAAGCCCTATTGTAAAACAAGAATATCCCAACGATGACACTCCGAGTGATCTTACGGATGCTAACCTGTGGTCTGATTTGAAGGAATTTGAACTTTCTAATGCTAAGCCTGCCTTGAAAATAGCATCTGAAAATGCAGATACTGTGTATTCATGTACTGGCTCTCGAAGTCTGGACATGGATTTTGGgatattttcttctcatttcaGCAGCGACGACTTCCACTTTGATTAA 930 0.457 MSTLCPPSSSKRKRVIRELVQGQDYAAQLKFLLQKPIGPDGSVSAKELISNVLRSFAETLSVLTSSEAASGDDEVAQNLVASAEEVAASSIDPRSEDSTESRKRSLSLTKDRRGSYKRRRTEQTSNIVSPTTDDDHAWRKYGQKEILNSQFPRSYFRCTRKFEQGCRATKQVQRIQENPDMYNITYIGLHTCKDTLKAPQMVTYSETWDSFLKNSHPDSNVPNEQHDPPIRSQSPIVKQEYPNDDTPSDLTDANLWSDLKEFELSNAKPALKIASENADTVYSCTGSRSLDMDFGIFSSHFSSDDFHFD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2682 309 ProSiteProfiles WRKY domain profile. 133 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2682 309 PANTHER WRKY DNA-BINDING TRANSCRIPTION FACTOR 70 8 298 - -
Ssu1g2682 309 MobiDBLite consensus disorder prediction 95 120 - -
Ssu1g2682 309 MobiDBLite consensus disorder prediction 86 133 - -
Ssu1g2682 309 Pfam WRKY DNA -binding domain 133 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2682 309 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2682 309 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 8 298 IPR044810 GO:0003700
Ssu1g2682 309 SUPERFAMILY WRKY DNA-binding domain 130 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g2682 309 Gene3D WRKY domain 117 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g2682 309 MobiDBLite consensus disorder prediction 214 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2682 Ssu-Chr1 72690104 72692172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2682 10 234 WRKY Transcription Factor Family AT3G56400 41.333 5.61e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu1g2682 WRKY 1.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2682 - - gmx:100170683 445.277