Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2681 ATGGAAGAGGTAATTAACTCCATTCGACGCGCTTGTAAATTGGCTCAAAACCTTGAACAAGACCTACCCAACTTGGCCAACCAGCCAGCTGTGCTGTCTTTATCCATTGATGAGATAAGTCAGGCATTTAGTGGTGCCAAAGAAAAGCTGTTACTAATCTCCCGACAGAACCAACCATCAGAATCACCGACACTGGTTCATGAAACACGGCAGCCTCAGATGGATGCTACTTTAATCCAGGAATGGCTAAGGTCTAGTCATGCAGTAACAATGGATCAGTTGTTTCAAATGCAGCAGTTTCATGCTGCGAGTAGCACGCTGCAGATTGGTGAAATGGGAGGTAGAGATGGGGAAGATTCCGAGAGAAACAAGGGATCTGAAGGAGAGGTGCAGGGAATCCACGCATCTCCTTCACGACCACGAAGAAGAAGCAGGGAAGTTaatcaagagaagagaaaagttaTGGTTCCTGCCCCACAGTTTGGAAACACAGAGATGCCACCGGAGGATGGCTTCACTTGGAGGAAATATGGCCAGAAAGAAATACTTGGCTCCAAGTACCCAAGGAGTTACTACAGGTGCACACACCAAAAGTTATATGAATGCCAAGCCAAGAAGCTAGTGCAGCGACTTGATCACAATCCTAACATATTCGAAGTAACATACAGAGGCGACCACACGTGCCACATGTCCTCCACAGCACCATCATCAGTTCCACTACAACAACTACTGATGGACATGACACAAAATAGTAATACCATTTCCTCCCAGTTGTCTCCGACAGTGAATCTCAGCCTCCACGCTGGTGGTGGCGCCACCGCCAGTAGTGGCAGTGGTGGAGCCTCCACTTCAAGATTCGGTGGTGATTATCCTGTGGTGGATATGGCTGCTGCTATGTTCAACTCTGGTAGCAGCAGCGGTAATAACAGCATGgaatttctcttctctcccgTTGAAGATAAAAGAGATCCAAAATAA 978 0.455 MEEVINSIRRACKLAQNLEQDLPNLANQPAVLSLSIDEISQAFSGAKEKLLLISRQNQPSESPTLVHETRQPQMDATLIQEWLRSSHAVTMDQLFQMQQFHAASSTLQIGEMGGRDGEDSERNKGSEGEVQGIHASPSRPRRRSREVNQEKRKVMVPAPQFGNTEMPPEDGFTWRKYGQKEILGSKYPRSYYRCTHQKLYECQAKKLVQRLDHNPNIFEVTYRGDHTCHMSSTAPSSVPLQQLLMDMTQNSNTISSQLSPTVNLSLHAGGGATASSGSGGASTSRFGGDYPVVDMAAAMFNSGSSSGNNSMEFLFSPVEDKRDPK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2681 325 Pfam WRKY DNA -binding domain 169 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2681 325 Gene3D WRKY domain 158 231 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g2681 325 PANTHER WRKY TRANSCRIPTION FACTOR 55 1 258 - -
Ssu1g2681 325 SMART WRKY_cls 168 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2681 325 MobiDBLite consensus disorder prediction 110 154 - -
Ssu1g2681 325 ProSiteProfiles WRKY domain profile. 169 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2681 325 SUPERFAMILY WRKY DNA-binding domain 165 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g2681 325 Coils Coil 1 28 - -
Ssu1g2681 325 MobiDBLite consensus disorder prediction 114 128 - -
Ssu1g2681 325 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 258 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2681 Ssu-Chr1 72672054 72676308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2681 1 324 WRKY Transcription Factor Family AT2G40740 39.763 1.08e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu1g2681 WRKY 4.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2681 - - gsj:114410180 525.398