Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2679 ATGGCTGCAGGTTCTTCTTCAAATTGGGTCATGGAAAGTGGGGATGTTCCTCATGTTTTGGCTGTTGATGACAACCTTATTGATCGCAAACTCGTTGAGAAACTGCTCAGGAATTCTTCTTGCAAAGTTACAACCGCAGAAAATGGGCCAAGGGCATTGGAGTTATTGGGCTTGACAAGTGGCGGGCAGAACAACATGAACGGTAGATCCAAAGTAAATTTGGTAATCACAGACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATTAAGGAATCGTCTGTAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAGTAA 357 0.4314 MAAGSSSNWVMESGDVPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALELLGLTSGGQNNMNGRSKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVIMSSENIPTRINK 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2679 118 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 118 IPR045279 GO:0009736
Ssu1g2679 118 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR17-LIKE 6 118 - -
Ssu1g2679 118 Gene3D - 18 118 - -
Ssu1g2679 118 SUPERFAMILY CheY-like 17 111 IPR011006 -
Ssu1g2679 118 Pfam Response regulator receiver domain 19 111 IPR001789 GO:0000160
Ssu1g2679 118 SMART REC_2 17 116 IPR001789 GO:0000160
Ssu1g2679 118 ProSiteProfiles Response regulatory domain profile. 18 118 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2679 Ssu-Chr1 72618596 72619671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2679 2 118 Response Regulator Gene Family AT3G56380 68.333 1.35e-48 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu1g2679 Response_reg 5.8e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2679 K14492 - gmx:100499827 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2497 6 58904367 58905161 Ssu1g2679 1 72618596 72619671 PCT