Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2677 ATGCGAGCGTTATCGAACATGAGAGTGAGtttttttcttgtgtgtttGCTGTTGCTGCTTTGTGTGGCGGTGACGGCGGTGAACCCTTCCCTAAACGACGACGTTTTGGGGCTGATTGTGTTCAAATCTGACACACAAGATCCGAAGGGGAAGCTTTCGTCTTGGAGCGAGGACGACGAGAGCGCGTGTGGGGGTGGCTGGGTTGGGGTGAAGTGCAACCCTAGATCCAACAGAGTGGTGGAGGTTAACCTTGATGGGTTTTCTCTCTCTGGGAGAATAGGTCGAGGGTTGCAAAGGTTGCAGTTTCTAAGGAAGCTTTCTCTGGCGAACAACAACCTCACTGGGGGGATAAACCCCAACATTGCTCGAATAGACAACCTTAGGGTCATTGACTTGAGTGGCAATAGTCTCTCAGGGGAGGTGTCTGATGATTTTTTCCGACAATGTGGGTCTCTCAGGGCTGTTTCCTTGGCCAGGAACAGGTTCTCTGGGAGCATTCCCTCTACTTTGGGGGCGTGTTCTGCTCTTGCTGCTATTGACCTTTCTAATAACCAGTTTTCTGGTTCTGTCCCCTCTGGGGTTTGGTCTTTGAGTGCTCTCAGGTCGCTGGACTTGTCTGATAACTTGTTGGAGGGGGAGATTCCTAAGGGGGTTGATGCGATGAAGAATCTGAGGAGTATCAGCGTTGCGAGGAATCGGTTGACCGGGAGTGTTCCTGATGGGTTTGGGAGTTGTTTGCTCTTGAGGTATATTGATTTAGGGGAGAATTCTTTTTCTGGGGGTATCCCTGGTGATTTTAAGGAACTTGCATTGTGTGGTTACCTTAGTTTGCGAGGAAATGCTTTCTCAGGAGAGGTTCCTGAGTGGATTGGAGAGATGAGAGGGCTTGAGACGTTAGACCTTTCCAACAATGGGTTTTCTGGTCAGCTGCCGAGCTCTATTGGAAGTCTTCAGTCGTTGaagatgtttaatttttctgggAATGGTTTCACTGGTAGTCTACCGGGGTCCATGGCGAATTGCACGAAACTTTCGGCGTTGGATGTCAGCCGGAATTCAATGTCCGGAGGGCTTCCGTTGTGGATTTTCAAGTCGGAAAACGGACCGAGTGGTCGCAAGAAAAGCCCTTTGTTTTCCTTGGCTGAAGTCGCGGTTCAAAGTCTTCAAGTTTTGGATTTGTCGCACAATGCATTTTCTGGTGAAATCACAGATGCTGTTGCAGGTTTAAGCTGCTTGCAGGTTTTGAATTTAGCGAATAACTCTCTTAGAGGTCCTATACCAGCTGCGATTGGTGAATTGAAAACATGTTCTAGTCTTGATTTGAGCTATAATAAGCTGAATGGAAGCATACCTTGGGAAATAGGAGGAGCTGTGTCCTTGAAAGAACTGGTATTGGAAAAGAACTTCCTAATTGGGAAAATTCCAACGTCAATTGAGAACTGCTCTTTGCTAACAACTTTGATTCTGTCCCAGAACAGGCTGAGCGGCCCAATACCTGCAGCAGTTGCAAAACTAACCAACCTGCAAACTGTGGACTTATCATTTAACAATCTTAGTGGAAACCTTCCTAAGCAATTGGCCAACCTTGCCAatcttttttccttcaatttatCTCACAACAACCTTCAGGGTGAACTGCCGGCTGGTGGTTTTTTCAACACCATTTCGCCTTCCTCTGTTTCTGGCAATCCATCTCTTTGTGGCTCTGCAGTGAACAGATCATGCCCTGCTGTCATGCCAAAGCCTATTGTTCTAAATCCCAACACTTCTACCGACACCGGCCCAGGTTCACTGCCTCCAAATATGGGTCACAAAAGAATCATTCTCAGCATTTCTGCACTCATTGCCATTGGTGCAGCGGCTGTCATTGTAATTGGTGTTATTAGCATCACTGTTCTCAATCTCCGTGTTCGCTCCTCCACATCTCGAGATGCAGCTGCCCTCACATTTTCTGCAGGGGATGAATTCAGCCATTCCCCGACTACAGATGCCAACTCTGGCAAGCTTGTCATGTTTTCAGGTGAGCCTGATTTCAGTTCTGGCGCGCATGCTTTGCTTAATAAGGATTGTGAGCTTGGGCGTGGAGGATTTGGGGCAGTGTACCAAACAGTTCTTGGAGATGGGCATTCAGTTGCTATAAAGAAGCTCACTGTATCAAGCCTTGTCAAGTCTCAAGAAGATTTTGAAAGAGAAGTgaagaaattaggaaaaatCAGACACCAAAACCTCGTGGAACTCGAGGGTTATTATTGGACTCCATCGCTGCAGCTCCTCATATACGAATATGTCTCTGGTGGTAGTCTGTATAAGCATCTCCATGAAGGATCTGGTGGAAACTTTCTCTCATGGAATGAGAGGTTTAATGTGATTCTAGGAACAGCAAAGGCCTTGGCACACTTGCACCATTCCAACATTATTCACTATAACATTAAGTCAACCAATGTCCTTCTTGATAGTTATGGTGAACCAAAAGTAGGGGACTTTGGCCTAGCGAGGCTGTTGCCAATGCTTGACCGATACGTTTTGAGCAGCAAAATTCAGAGCGCACTCGGCTACATGGCACCAGAGTTTGCCTGCAAAACGGTGAAAATCACCGAGAAATGTGATGTGTATGGGTTTGGTGTCTTGGTTTTGGAGATTGTTACAGGGAAGAGGCCTGTTGAATACATGGAGGATGATGTGGTGGTACTTTGTGACATGGTGAGAGGGGCTTTGGAAGAAGGCAGGGTGGAGGAATGTATTGATGAGAGGCTCCAAGGGAAGTTTCCAGCAGAAGAAGCTATTCCTGTGATGAAGCTAGGCTTAATATGTACTTCTCAAGTGCCATCTAATAGGCCTGACATGGGAGAGGTAGTTAACATATTGGAGCTGATAAGATGTCCCTCTGAAGGACAAGAAGAGTTGGCATGA 2910 0.4595 MRALSNMRVSFFLVCLLLLLCVAVTAVNPSLNDDVLGLIVFKSDTQDPKGKLSSWSEDDESACGGGWVGVKCNPRSNRVVEVNLDGFSLSGRIGRGLQRLQFLRKLSLANNNLTGGINPNIARIDNLRVIDLSGNSLSGEVSDDFFRQCGSLRAVSLARNRFSGSIPSTLGACSALAAIDLSNNQFSGSVPSGVWSLSALRSLDLSDNLLEGEIPKGVDAMKNLRSISVARNRLTGSVPDGFGSCLLLRYIDLGENSFSGGIPGDFKELALCGYLSLRGNAFSGEVPEWIGEMRGLETLDLSNNGFSGQLPSSIGSLQSLKMFNFSGNGFTGSLPGSMANCTKLSALDVSRNSMSGGLPLWIFKSENGPSGRKKSPLFSLAEVAVQSLQVLDLSHNAFSGEITDAVAGLSCLQVLNLANNSLRGPIPAAIGELKTCSSLDLSYNKLNGSIPWEIGGAVSLKELVLEKNFLIGKIPTSIENCSLLTTLILSQNRLSGPIPAAVAKLTNLQTVDLSFNNLSGNLPKQLANLANLFSFNLSHNNLQGELPAGGFFNTISPSSVSGNPSLCGSAVNRSCPAVMPKPIVLNPNTSTDTGPGSLPPNMGHKRIILSISALIAIGAAAVIVIGVISITVLNLRVRSSTSRDAAALTFSAGDEFSHSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLGDGHSVAIKKLTVSSLVKSQEDFEREVKKLGKIRHQNLVELEGYYWTPSLQLLIYEYVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHHSNIIHYNIKSTNVLLDSYGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECIDERLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELA 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2677 969 Gene3D Transferase(Phosphotransferase) domain 1 763 967 - -
Ssu1g2677 969 Pfam Protein tyrosine and serine/threonine kinase 688 954 IPR001245 GO:0004672|GO:0006468
Ssu1g2677 969 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 11 960 - -
Ssu1g2677 969 CDD STKc_IRAK 692 958 - -
Ssu1g2677 969 ProSiteProfiles Protein kinase domain profile. 686 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2677 969 Pfam Leucine Rich Repeat 459 481 IPR001611 GO:0005515
Ssu1g2677 969 Pfam Leucine Rich Repeat 126 145 IPR001611 GO:0005515
Ssu1g2677 969 Gene3D Ribonuclease Inhibitor 32 192 IPR032675 -
Ssu1g2677 969 SMART LRR_typ_2 505 528 IPR003591 -
Ssu1g2677 969 SMART LRR_typ_2 529 553 IPR003591 -
Ssu1g2677 969 SMART LRR_typ_2 124 148 IPR003591 -
Ssu1g2677 969 SMART LRR_typ_2 293 317 IPR003591 -
Ssu1g2677 969 SMART LRR_typ_2 409 433 IPR003591 -
Ssu1g2677 969 SMART LRR_typ_2 221 244 IPR003591 -
Ssu1g2677 969 SMART LRR_typ_2 197 220 IPR003591 -
Ssu1g2677 969 SMART LRR_typ_2 385 408 IPR003591 -
Ssu1g2677 969 SUPERFAMILY L domain-like 238 602 - -
Ssu1g2677 969 SUPERFAMILY Protein kinase-like (PK-like) 689 959 IPR011009 -
Ssu1g2677 969 Gene3D Phosphorylase Kinase; domain 1 680 762 - -
Ssu1g2677 969 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Ssu1g2677 969 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 960 - -
Ssu1g2677 969 Pfam Leucine rich repeat 484 542 IPR001611 GO:0005515
Ssu1g2677 969 Pfam Leucine rich repeat 387 446 IPR001611 GO:0005515
Ssu1g2677 969 Pfam Leucine rich repeat 294 353 IPR001611 GO:0005515
Ssu1g2677 969 Pfam Leucine rich repeat 151 210 IPR001611 GO:0005515
Ssu1g2677 969 Gene3D Ribonuclease Inhibitor 193 287 IPR032675 -
Ssu1g2677 969 Gene3D Ribonuclease Inhibitor 386 580 IPR032675 -
Ssu1g2677 969 SUPERFAMILY L domain-like 31 267 - -
Ssu1g2677 969 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Ssu1g2677 969 Gene3D Ribonuclease Inhibitor 288 370 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2677 Ssu-Chr1 72558321 72562011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2677 7 968 Receptor kinase-like Gene Family AT3G56370 68.356 0.0 1287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Ssu1g2677 PK_Tyr_Ser-Thr 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2677 - - gmx:100791629 1714.12