Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2675 atgacgacgacgacgacgacgacgacgatgTCGAAGGCGGACGCCGAAGTAGAGGGACTCGTCGGTGATGGAAGCAAAAGCGAGGTTCACAATAACAACGGtaacggtggtggtggcggtaaTTTGCCTGCTGTCGCAAACGGGAAAGCGCGGCATCATTCCCCTTATGTTTCTGGAAGGGAGCTATTGGGGAAGGATGGTGGAGACATTGGGCGGTTGGTGCATAGCAATGTGAGTGGTGGCGATGAAGATCATCGGCAAGAGGGGTTTGGTAAGTCTCAGAATTCTGTGACCGTTGCTGAAACTGACTGTGAGGAGTACTATTCGCACTATCTTCAAGGCGCAGAAGGGGCTTCTGTGCAGAAAGTTATGGTGGATGACAATGGATGTGGGTTTAGCGGGAGAAAGGATGTTGGGTATTCCAGCGAGTCAGGGGAGTCACTCAGGGCAATTCTTTCAGATCCTGTTACGGGAGCTCTTATGGATGATGCGATGATATTACCGTGTGGACATTCATTTGGTGGAGGTGGAATACAGCATGTTATTAGAATGAAAGCTTGCTGCACTTGTTCTCAACCCACAACTGAGGAATCAATATCTCCAAACCTATCACTTCGAGCTGCTGTGCAGGCATATCGTCGGGAAGAGGAGACACAATTTTACCGGTcaccaaaaagaagaagagagagatttGATCAGGGTGGTTTTGGAGATTCAGCTGTTATGGAACCACCAAGGAGTAGAGGTGTTCAGTTTCCATTTGCTGTGATGGACCGGGTTATCATAAAGGGAAACAAAAGGACACCACAACGCTTTGTTGGGCGCGAAGCTATTGTAACAACGCAATGCCTGAATGGATGGTATGTGGTGAAGACATTGGACAATGCAGAAAGTGTAAAGTTGCAGTATCGATCCCTTGCCAAGGTTTTGGATGATCCTTCAAAACCTGCCTCTAGCAAGATGGCACCTAATTGGCTTTAG 981 0.4434 MTTTTTTTTMSKADAEVEGLVGDGSKSEVHNNNGNGGGGGNLPAVANGKARHHSPYVSGRELLGKDGGDIGRLVHSNVSGGDEDHRQEGFGKSQNSVTVAETDCEEYYSHYLQGAEGASVQKVMVDDNGCGFSGRKDVGYSSESGESLRAILSDPVTGALMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQPTTEESISPNLSLRAAVQAYRREEETQFYRSPKRRRERFDQGGFGDSAVMEPPRSRGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLDDPSKPASSKMAPNWL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2675 326 MobiDBLite consensus disorder prediction 23 53 - -
Ssu1g2675 326 ProSiteProfiles U-box domain profile. 147 219 IPR003613 GO:0004842|GO:0016567
Ssu1g2675 326 Pfam U-box domain 153 216 IPR003613 GO:0004842|GO:0016567
Ssu1g2675 326 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 13 326 - -
Ssu1g2675 326 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 13 326 - -
Ssu1g2675 326 SUPERFAMILY RING/U-box 144 220 - -
Ssu1g2675 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 218 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2675 Ssu-Chr1 72519867 72524339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2675 93 326 Plant U-box Gene Family AT5G05230 59.917 2.98e-92 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2675 - - gmx:100786717 554.288