Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2672 ATGGCTCTTCATCACCGCTTGTTGCTTGACACAAATCCAAGTTCACCTGCACCAAGTAGCATGAATAGGACAAGAGAGACTTTCACAGGTGAGGCAAATTTTGATACCAACATGGTGATTATTTTGGCGGCGTTGCTTTGTGCACTTATATGTGCTTTGGGGCTCAACTCAATTGTGCGCTGTGCTCTAAGGTGTAGCCGCAGGTTTGCTTTTGAGACCCCAGAGGAGACTGCAGCACGTTTGGTCGCAAAAGGCCTAAAGAAGAGTGCATTGCATCAGATCCCTATAGTTGTTTATGGTTCAGGTAGTGTTGGTATTGCAGCCACAGATTGTCCAATTTGTCTTGGGGAGTTTGTGGATGGGGAGAAAGTTAGAGTGTTGCCAAAATGTAACCATGGATTCCATGTAAGGTGCATAGATACATGGCTTCTCTCACACTCCTCTTGTCCTAATTGCAGACAGTCTTTGCTTGAGCAGCCAACTATTTCTGGAGCTGTAGCTGCAGGAACCAGTCACCATGCAGGGAATGCCTTGGGGGGACATGAACATGAGTCTATAGCTGTGGCTGTGGAAGAGGTTGGCTAA 585 0.4684 MALHHRLLLDTNPSSPAPSSMNRTRETFTGEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPEETAARLVAKGLKKSALHQIPIVVYGSGSVGIAATDCPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRQSLLEQPTISGAVAAGTSHHAGNALGGHEHESIAVAVEEVG 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2672 194 SUPERFAMILY RING/U-box 110 159 - -
Ssu1g2672 194 PANTHER RING-H2 FINGER PROTEIN ATL74 4 190 - -
Ssu1g2672 194 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 4 190 - -
Ssu1g2672 194 Pfam Ring finger domain 110 153 IPR001841 -
Ssu1g2672 194 CDD RING-H2_EL5_like 110 153 - -
Ssu1g2672 194 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Ssu1g2672 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 161 IPR013083 -
Ssu1g2672 194 SMART FANCL_C_2 107 160 - -
Ssu1g2672 194 SMART ring_2 111 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2672 Ssu-Chr1 72474557 72475141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2672 6 161 C3H Transcription Factor Family AT3G10910 61.818 2.55e-63 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2672 - K19040 gmx:100787273 350.517