Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2671 ATGTCGTTCCCTCACCACCGTCGATCTCAATCGGAGTTGCATTTCCGGATCTCCGACGACTTCGACCTCGAAGTGGATCTCTCTCCGCCGCATTTCCAAGATCCGACCCCGCTCGACCAATCCGGATCCAAACCCCAATCTCTGCCACCCGAGAGTAGCCAAACCGGCTGCTCCGGTCACCGGCGAAGCAGTTCCGCCGATGCCTCTTCGTCGTCGTTAGTGGAGGGCATCGAGGCCAAGAAGGCCTTGTCCCCTGATAAGCTCGCTGAAATGTGGACCGTGGATCCCAAACGAGCCAAGAgGATTCTGGCTAACCGCCAATCCGCCGCGCGCTCTAAAGAGAGGAAAGCTTGTTATGTATCGGAGcttgaaagaaaatttcaatCGCTTCAAACGGAAGCAACCGCTCTTTCTGCTCAATTAAGTCTTTTCCAGAGAGATACAACTGGTCTGACTACTGAAAACACAGAGTTGAAGCTTAGGTTACAAGCCATGGAACAACAAGCGAATTTATGTGATGCTCTAAATGAAGCACTGAAGAAAGAAGTTGATAGGCTCAGGATTGCAACTGGAGAGATAGTAATGCATGCTGATACCTATGGTTTGGGAATGCATCAACTTACATATTCTCAAGCTTCGTTCTTCTCACATCAGTCACAACATGGGCTGAGCGAACTTCAGGCCATACAAATGCCGCAGTTGCATTCACTCTCATCTAATGTGTCTACTTGTCATGAGCCTCTGTTTGATCTAGACATTCCCTATGATTTGTCAGAAATGTTGCCGAGTGATTCTATCGGCCAATTTCAGGGGCTGGACATAGGCCACGGGGTTTCTCATGCTCTGATGCCAGATTGCCCCTCCATTTCTGTTAATAAAATCAACAATGCCTTTTGA 897 0.4805 MSFPHHRRSQSELHFRISDDFDLEVDLSPPHFQDPTPLDQSGSKPQSLPPESSQTGCSGHRRSSSADASSSSLVEGIEAKKALSPDKLAEMWTVDPKRAKRILANRQSAARSKERKACYVSELERKFQSLQTEATALSAQLSLFQRDTTGLTTENTELKLRLQAMEQQANLCDALNEALKKEVDRLRIATGEIVMHADTYGLGMHQLTYSQASFFSHQSQHGLSELQAIQMPQLHSLSSNVSTCHEPLFDLDIPYDLSEMLPSDSIGQFQGLDIGHGVSHALMPDCPSISVNKINNAF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2671 298 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 95 158 IPR004827 GO:0003700|GO:0006355
Ssu1g2671 298 SMART brlzneu 93 157 IPR004827 GO:0003700|GO:0006355
Ssu1g2671 298 Coils Coil 162 182 - -
Ssu1g2671 298 MobiDBLite consensus disorder prediction 34 72 - -
Ssu1g2671 298 Pfam bZIP transcription factor 97 149 IPR004827 GO:0003700|GO:0006355
Ssu1g2671 298 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 2 294 - -
Ssu1g2671 298 Coils Coil 120 140 - -
Ssu1g2671 298 CDD bZIP_plant_RF2 98 147 IPR044759 GO:0003700|GO:0006355
Ssu1g2671 298 PANTHER BZIP TRANSCRIPTION FACTOR 18 2 294 - -
Ssu1g2671 298 SUPERFAMILY Leucine zipper domain 97 151 IPR046347 GO:0003700|GO:0006355
Ssu1g2671 298 MobiDBLite consensus disorder prediction 25 73 - -
Ssu1g2671 298 Gene3D - 96 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2671 Ssu-Chr1 72454179 72457274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2671 4 274 bZIP Transcription Factor Family AT2G40620 49.216 4.60e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu1g2671 bZIP_1 3.2e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2671 - - gmx:100807712 462.996