Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2666 ATGGTGACTGAAATCATTGATCTTTCAAACTCCCCTCCATCATCACCCAGATCATCTAATAATGCAGCAAGGATTCTCAATTTTGATTCTGTTTCTATtggaaaaaatcaatttgagcaAGTTCCTATATCCTTAATGGCTTGCCCAAATCCCAACTTGTACCATACCAACCAGCCACAAACTACTCTATGGCCAGTTTCAGGACATATCAATGAGCCCTTTCAGTTTGCTACTTTCCAACCCAGCATGCAAAGGGTTGTTACGGTACTTGAACCAATACCTGAATCAAACGCATACCTGTTTCCTAATGGAGCTAGACTCAAGGAGCCCTGGACACACAGAGAGCACGAGCTATTTCTGATGGGGCTAATCAAGTATGGAAAAGGGCGCTGGAGCAAAATTGCTAGACACTTTGTGTGGAATAAGACACCACAACAAGTTCAGAGCTATGCTGCTAGCTTCTTCAGGCATCTACCATCCACATACCTACATGGCTTTAGGAGAAGGAAGCCAACCTACCCTGCAGCTAACCTCATGTCCAGAAACAACCACTTTATGGTTGCATCTGCATCTGCCTCATACTCCATGCCTATGATTGTCAATCAGCCACAACAAACCCACTTGTTTTTTCCAGAGAAAGCTCCTTTCCTTCTGGCCCCATCATATGGAAAAGCTAGCAgcaacaccaccaccatcaaCTATGGGTTCCAGATGCAGACAGGTGGTGCAAGCACTTCCGTGAATGATAGTGCTAATGGAGAAGTTGATTTGGAGCTGCGTATGGGTCGATGCCACTGA 798 0.4286 MVTEIIDLSNSPPSSPRSSNNAARILNFDSVSIGKNQFEQVPISLMACPNPNLYHTNQPQTTLWPVSGHINEPFQFATFQPSMQRVVTVLEPIPESNAYLFPNGARLKEPWTHREHELFLMGLIKYGKGRWSKIARHFVWNKTPQQVQSYAASFFRHLPSTYLHGFRRRKPTYPAANLMSRNNHFMVASASASYSMPMIVNQPQQTHLFFPEKAPFLLAPSYGKASSNTTTINYGFQMQTGGASTSVNDSANGEVDLELRMGRCH 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2666 265 Gene3D - 109 159 - -
Ssu1g2666 265 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g2666 265 SUPERFAMILY Homeodomain-like 110 158 IPR009057 -
Ssu1g2666 265 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 19 262 - -
Ssu1g2666 265 ProSiteProfiles SANT domain profile. 106 159 IPR017884 -
Ssu1g2666 265 SMART sant 107 157 IPR001005 -
Ssu1g2666 265 CDD SANT 110 151 IPR001005 -
Ssu1g2666 265 Pfam Myb-like DNA-binding domain 108 150 IPR001005 -
Ssu1g2666 265 ProSiteProfiles Myb-like domain profile. 103 155 IPR001005 -
Ssu1g2666 265 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 108 157 IPR006447 GO:0003677
Ssu1g2666 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 159 IPR017930 -
Ssu1g2666 265 PANTHER MYB-LIKE DNA-BINDING DOMAIN PROTEIN 19 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2666 Ssu-Chr1 72379790 72380989 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu1g2666 Myb_DNA-binding 1.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2666 - - gsj:114414101 360.147