Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2651 ATGGGAACTGTTAGCAACATTGGCTTCCCTTCAGTATTCAGAGTTCCTTTGGATACGCAAATACTCTCAAAGCAGATAAAGAATAAATCATCGTGCGGTTGTATGGTTCCTCCTTATCCTAACTATTCCGTTAGGCTGAGTCCAATCTGTTGTAAACTATCAGAAAGTGGGATTGAGGAGAACCCCACGAACACGAGCAAGAGGGCCTCTAAGACCAAGGACAGGATGGAGGAGTACAATATAGCTATGAAGAGGATGATGAGGAACCCTTACGAGTATCACCATGATCTGGGTATGAATTATACTCTTATAACGGACTACTTGATTGTGGGCTCTCAACCACAGAAACCCGAAGACATAGATCACCTCAAAAAGGAAGAGGGTGTGGCATACATTCTAAACTTGCAACAGGATAAGGATGTTGAGTATTGGGGAATAGACTTGCAGTCAATAATAAGAAGGTGTCGTGAACTTGAAATTAGCCACATGAGGAGACCGGCAAAAGACTTTGATCCAGACTCCTTGCGAAGCGAACTACCTAAAGCAGTCTCATCCTTAGAATGGGCAATTTctgagagaaaaggaagagttTATGTGCATTGTACTGCTGGACTTGGAAGAGCTCCAGCGGTGGCAATTGCTTATTTGTTCTGGTTTTGTGGCATGAATCTAAATGTGGCATATGATTTGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAAGAGCAATACGTGGAGCTACTTATGATTTGGCTAAGAATGATCCATGGAACGAGCCATTTGAGAGTCTTCCAGAATATGCATTTGAGGATATAGCAGACTGGGAAAGAAACTTGATTCAAAATCGTGTTCTTTCCCTTCGTGGAACTTGA 873 0.4135 MGTVSNIGFPSVFRVPLDTQILSKQIKNKSSCGCMVPPYPNYSVRLSPICCKLSESGIEENPTNTSKRASKTKDRMEEYNIAMKRMMRNPYEYHHDLGMNYTLITDYLIVGSQPQKPEDIDHLKKEEGVAYILNLQQDKDVEYWGIDLQSIIRRCRELEISHMRRPAKDFDPDSLRSELPKAVSSLEWAISERKGRVYVHCTAGLGRAPAVAIAYLFWFCGMNLNVAYDLLTSKRPCGPNKRAIRGATYDLAKNDPWNEPFESLPEYAFEDIADWERNLIQNRVLSLRGT 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2651 290 Coils Coil 69 89 - -
Ssu1g2651 290 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 3 290 - -
Ssu1g2651 290 Pfam Dual specificity phosphatase, catalytic domain 121 240 IPR000340 GO:0008138|GO:0016311
Ssu1g2651 290 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 177 236 IPR000387 GO:0016311|GO:0016791
Ssu1g2651 290 Gene3D Protein tyrosine phosphatase superfamily 83 290 IPR029021 -
Ssu1g2651 290 SMART dsp_5 100 250 IPR020422 GO:0006470|GO:0008138
Ssu1g2651 290 ProSiteProfiles Dual specificity protein phosphatase domain profile. 100 257 IPR020422 GO:0006470|GO:0008138
Ssu1g2651 290 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 97 242 IPR029021 -
Ssu1g2651 290 CDD DSP_laforin-like 99 246 IPR045204 GO:0019203|GO:0046838
Ssu1g2651 290 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 3 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2651 Ssu-Chr1 72041303 72043517 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2651 29 290 Protein tyrosine phosphatase (PTP) family AT3G10940 72.932 1.57e-142 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2651 - - gmx:100787079 524.628