Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2644 ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGGAAGAAGATCAAGAGGGAAGGAGATGTTTCTTCTCAAATGGGAAGAAGACATATGTTAGGCCCTCCTGGAACCCTAAATACTATCACCCCTTGTGCAGCATGTAAGTTGTTGAGAAGAAGATGTGCCCAAGAATGTCCCTTTTCTCCATATTTCTCTCCCCATGAGCCCCAAAAGTTTGCTTCAGTCCACAAAGTTTTTGGTGCCAGCAACGTCTCAAAGATGCTCATgGAAGTACCAGAGTGTCAGAGAGCTGATGCTGCAAATAGTCTAGTTTATGAGGCTAACGTGAGGCTAAGAGACCCTGTGTATGGATGCATGGGTGCAATTTCTGCTTTGCAACAGCAAGTTCAATCTTTACAAGCTGAACTCAATGCAGTGAGGGCTGAAATACTTAAATACAAACTCAGGGAAGCTAACATGATACCCTCCTCTCATGTTGCAATGCTCCCTTCATCTGGGGCTGTTTCAATTGCTGCTCCACCGccaccacctcctcctccttctcttcctccaacttcttcctcttcttccatGTACATCCAACAGAGCGATCCCACCACTTATACCACAATTTCAAGCGATAATATTTcctattttggttaa 639 0.3975 MSRERERFDEIGKKIKREGDVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRAEILKYKLREANMIPSSHVAMLPSSGAVSIAAPPPPPPPPSLPPTSSSSSMYIQQSDPTTYTTISSDNISYFG 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2644 212 Coils Coil 121 148 - -
Ssu1g2644 212 MobiDBLite consensus disorder prediction 185 212 - -
Ssu1g2644 212 MobiDBLite consensus disorder prediction 169 212 - -
Ssu1g2644 212 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Ssu1g2644 212 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Ssu1g2644 212 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 26 212 - -
Ssu1g2644 212 MobiDBLite consensus disorder prediction 169 184 - -
Ssu1g2644 212 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 26 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2644 Ssu-Chr1 71875805 71876883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2644 27 169 AS2 family AT2G40470 85.034 6.39e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu1g2644 LOB 2.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2644 - - gmx:100786324 343.969