Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2643 ATGAATTCCCCACCCAAGTTGTTGTTGCTGTCCCTCCCCGTGTCGcttcttctctttctcactCTCCTGTCCGCTTCTTCTTCGGCCTCCCTCCCGGAGCTCCGATCTCTGCTGGAATTCAAGAAAGGGATAACCGTAGATCCGCTGAAGCTTCTAGACTCATGGACCCCCAACTCGGTCGCCGAGTCGGCCGCCGCGTGTCCTTATTCCTGGCGAGGGGTTCTCTGCGACGAGGAGTCCGGCAACGTCACCGGAATCGTCCTCGACCGCCTGGGCCTCGGCGGCGAGCTGAAGTTCCACACTCTGCTGGGCCTCAAGATGCTGAGAAACCTCTCCCTCTCCGGCAACGAGTTCACCGGGCGGTTGCCCCCTTCGCTGGGGTCGCTCGCCTCGCTCCAGCATTTGGATCTTTCGCAGAACAAGTTCTACGGCCCCGTCCCCGCGCGGATCAACGACCTCTGGGGTCTCAATTACCTCAATTTGTCCAACAACCAGTTCAAGGGCGGCTTCCCCAGCGGTCTCAACAACCTTCAGCAGCTCCGCGTCCTCGATTTGCACGCCAACGGCCTCTGGGCCGAAATTGGGGACGTGCTCTCCACGCTCCGGAACGTCGAGCGTGTCGATTTGAGCCTTAATCAGTTCTTCGGACGTCTCGCCCTCGCCGCCGAGAATTTTTCCGGGTTGGCCAACACCGTGCATTTTTTGAACCTCAGTTACAACAACTTGAATGGTCCCTTCTTCGGAAGCAGCGCCGTTAGTTTGTTCCGCAACCTGCAGGTTTTGGACCTGAGTAACAACTCCATCACGGGGGAGCTTCCTTCCCTTGGCTCCCTGCCCGCGCTTCGCGTTCTCAGGCTTGGCCGGAATCAATTGTTCGGCTCCGTGCCGGAGGAGCTGTTGCAGACTTCGGTGCCGCTCGAAGAGTTGGATCTCAGTGTCAATGGGTTTACCGGTTCAATTGCTGTAATCAACTCTacatctttaaatattttgaatcttTCATGCAATAGTTTATCAGGCTCCTTGCCAACTTCTTTGAGAAGGTGTACAGTAATTGACTTGAGCAGGAATATGTTATCTGGTGACATTTCTGTTATACAGAACTGGGAAGCTCCATTGGAGGTTATACGTCTGAGTTCAAACAAGCTGTCAGGATCCTTGCCTCCTATTTTAGGAACCTATTCAAAATTGTCTACTGTTGACTTAAGTTTAAATGAACTTAATGGATCCATTCCACGAGGTTTAGTTACTTCGTCGTCAGTGACAAGACTAAATCTTTCTGGAAATCAATTTACGGGGCCACTTCTGCTTCAAGGTTCAGGAGCTAGTGAATTACTACTTATGCGTCCTTCTCAACCAATGGAATATCTTGACGTATCTAATAACTCCTTAGAAGGTGCCTTGCTTTCCGAAATAGCTAGGATGGGTGGGCTCAAACTGCTGAATCTGGCAAGGAATGGCTTTTCTGGACAGCTGCCAAATGAATTGAACAAACTTAGTTATTTGGAGTACCTTGATTTGTCTAACAACAAATTTACTGGAAATATTCCTGATAAGCTTTCATCCAGCTTAACTGTATTTAACGTGTCCAATAATGATCTATCTGGTCGTGTTCCTGATAATTTGCGGCGGTTCTCTCCTTCATCCTTTCACCCTGGAAATGGAAAGCTAATGTTACCAAATGATTCTCCTGAAACTTCTTCGGTGCCTGATAACATTCCAGATAAGGGTAGACATCATAGTTCAAAGGGTAATATCAGGATAGCAATTATTCTTGCCTCAGTGGGTGCTGCTGTTATGATTGCTTTTGTTTTATTGGCTTATCATCGAacacaattaaaagaatttCATGGAAGAAGTGAGTTCACTGGTCAAAATACTAGAAGAGATGTCAAGTTAGGACTTGCAAGGCCTTCCCTCTTCAAGTTCAATACAAATGTTCAACCCCCAGCTACTTCATTGAGTTTTTCAAATGATCACCTGTTGACTTCCAATTCAAGGTCACTCGCTGGACAGTCAGAGTTTATAACTGAAATTTCTGAGCATGGCTTACCTCAGGGAATGGTGGCTACTAGTTCAGCATCTGTAAATCCTAATTTGATGGATAACCCTCCAACTTTGTCTGGAAGGAAGTCTTCTCCTGGTTCCCCACTGTCATCCTCACCCCGTTTTATAGAGGCTTGTGAAAAGCCAGCGATGTTGGATGTTTACTCACCAGATCGGTTGGCTGGGGAACTGTTTTTCCTGGATTCTTCCCTAGCATTCACTGCAGAGGAATTATCTCGAGCCCCAGCTGAAGTTCTTGGCAGAAGTAGCCATGGCACTTTATACAAAGCTACTCTGGACAGTGGTCATATGTTGACTGTAAAATGGTTACGGGTGGGATTGGTCAAACATAAAAAGGAATTTGCTAGAGAAGTTAAAAGGATTGGTTCTATGAGGCATCCAAACATTGTCCCATTACTAGCATACTATTGGGGGCCTAGGGAACAAGAGAGGCTTCTTTTAGCGGACTATATACATGGGGACAGCTTGGCCCTTCATCTCTATGAGAGCACACCCCGGAGGCACTCCCCGTTATCATTCAGCCAGAGAATAAGAGTTGCTGTTGATGTTGCTCGATGTCTTTTATACCTTCATGATCGAGGACTTCCCCATGGAAACCTAAAGCCAACAAATATATTGTTAGCAGGCCCTGATTACAATGCTCGTCTTACTGACTACGGTCTGCACCGGCTGATGACGCTGGCTGGAATTGCAGAGCAGATACTAAATCTTGGAGCACTTGGATACCGTGCTCCAGAACTTGCCACTGCATCCAAACCAGTTCCATCCTTTAAGGCTGATGTGTATGCACTTGGTGTGATCCTAATGGAATTGTTAACGAGAAAAAGTGCAGGTGACATAATATCAGGGCAATCTGGTGCTGTTGATCTTACAGATTGGGTTAGGCTGTGTGAGCGAGAAGGAAGGGTAATGGACTGTATTGACAGAGACATTGCAGGTGGGGAAGAATCCTCCAAAGAGATGGATGAACTGCTTGCAATATCTCTCAGGTGTATTCTCCCTGTAAATGAGAGGCCTAACATCAGACAAGTTTTTGACGATCTCTGTTCAATATCggtttga 3129 0.4666 MNSPPKLLLLSLPVSLLLFLTLLSASSSASLPELRSLLEFKKGITVDPLKLLDSWTPNSVAESAAACPYSWRGVLCDEESGNVTGIVLDRLGLGGELKFHTLLGLKMLRNLSLSGNEFTGRLPPSLGSLASLQHLDLSQNKFYGPVPARINDLWGLNYLNLSNNQFKGGFPSGLNNLQQLRVLDLHANGLWAEIGDVLSTLRNVERVDLSLNQFFGRLALAAENFSGLANTVHFLNLSYNNLNGPFFGSSAVSLFRNLQVLDLSNNSITGELPSLGSLPALRVLRLGRNQLFGSVPEELLQTSVPLEELDLSVNGFTGSIAVINSTSLNILNLSCNSLSGSLPTSLRRCTVIDLSRNMLSGDISVIQNWEAPLEVIRLSSNKLSGSLPPILGTYSKLSTVDLSLNELNGSIPRGLVTSSSVTRLNLSGNQFTGPLLLQGSGASELLLMRPSQPMEYLDVSNNSLEGALLSEIARMGGLKLLNLARNGFSGQLPNELNKLSYLEYLDLSNNKFTGNIPDKLSSSLTVFNVSNNDLSGRVPDNLRRFSPSSFHPGNGKLMLPNDSPETSSVPDNIPDKGRHHSSKGNIRIAIILASVGAAVMIAFVLLAYHRTQLKEFHGRSEFTGQNTRRDVKLGLARPSLFKFNTNVQPPATSLSFSNDHLLTSNSRSLAGQSEFITEISEHGLPQGMVATSSASVNPNLMDNPPTLSGRKSSPGSPLSSSPRFIEACEKPAMLDVYSPDRLAGELFFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVKHKKEFAREVKRIGSMRHPNIVPLLAYYWGPREQERLLLADYIHGDSLALHLYESTPRRHSPLSFSQRIRVAVDVARCLLYLHDRGLPHGNLKPTNILLAGPDYNARLTDYGLHRLMTLAGIAEQILNLGALGYRAPELATASKPVPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGRVMDCIDRDIAGGEESSKEMDELLAISLRCILPVNERPNIRQVFDDLCSISV 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2643 1042 PANTHER OS07G0626500 PROTEIN 10 1039 - -
Ssu1g2643 1042 MobiDBLite consensus disorder prediction 549 581 - -
Ssu1g2643 1042 Gene3D Ribonuclease Inhibitor 32 220 IPR032675 -
Ssu1g2643 1042 Gene3D Transferase(Phosphotransferase) domain 1 841 1042 - -
Ssu1g2643 1042 SUPERFAMILY Protein kinase-like (PK-like) 765 1037 IPR011009 -
Ssu1g2643 1042 ProSiteProfiles Protein kinase domain profile. 762 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2643 1042 Pfam Leucine rich repeat N-terminal domain 32 77 IPR013210 -
Ssu1g2643 1042 Gene3D Ribonuclease Inhibitor 221 567 IPR032675 -
Ssu1g2643 1042 SUPERFAMILY RNI-like 88 434 - -
Ssu1g2643 1042 ProSiteProfiles Leucine-rich repeat profile. 257 279 IPR001611 GO:0005515
Ssu1g2643 1042 SUPERFAMILY L domain-like 454 546 - -
Ssu1g2643 1042 MobiDBLite consensus disorder prediction 695 721 - -
Ssu1g2643 1042 MobiDBLite consensus disorder prediction 695 720 - -
Ssu1g2643 1042 Pfam Leucine Rich repeats (2 copies) 257 295 IPR025875 -
Ssu1g2643 1042 PANTHER OS07G0626500 PROTEIN 10 1039 - -
Ssu1g2643 1042 Pfam Protein kinase domain 766 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2643 1042 SMART LRR_typ_2 278 302 IPR003591 -
Ssu1g2643 1042 SMART LRR_typ_2 499 523 IPR003591 -
Ssu1g2643 1042 SMART LRR_typ_2 105 129 IPR003591 -
Ssu1g2643 1042 SMART LRR_typ_2 255 277 IPR003591 -
Ssu1g2643 1042 SMART LRR_typ_2 177 201 IPR003591 -
Ssu1g2643 1042 Gene3D Phosphorylase Kinase; domain 1 743 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2643 Ssu-Chr1 71863465 71868839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2643 70 621 Receptor kinase-like Gene Family AT5G62230 33.571 3.78e-55 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu1g2643 Pkinase 2.8e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2643 - - gmx:100802768 1814.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2643 1 71863465 71868839 Ssu1g2643 1 71863465 71868839 ECH