Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2622 ATGGACTTGGCTGCAAAGCTTCATCACCTGGACCTCACCGGCGCGGTCATTCTGGATGCACGAAAGCCCTCCGTACTACGACACCTTCCGCCACGCGCACTCCCCAGGGCGAACGCCAACACTAACACCAATTTAATTTACACCAATCGGTTCTCGGGCCCATTACGGCCCAATTCCACTTCGCCATCGGGCCTGTCCACGGTAACCGTGGACGACGACATCGAGTCCCTCTTTTCCTCCGACCCTTCTTCCGTCGACGAGCGGCGCGTGAAGAAACAGCCGAGCCCCGGCGCGTCGGGCGTTTCCTCCGGCGTGAAGCTGGAAAACGTGGGGAAAACCTACAAGGGCGTGACGGTGTTGAAGGACGTGAGTTGGGAGGTGAAGAAGGGGGAGAAGGTGGGTCTGGTCGGAGTGAACGGCGCGGGGAAGACGACGCAGATGAGGATTATCGCGGGTTTGGAGGAATCCGATTCGGGGAACGTGATAAAGGCGAAGGCGAACATGAGAATCGCGTTTCTGAACCAGGAGTTCGAGGTGTCGCCGAGCAGGACGGTGAGGGAGGAGTTCACGAGCGCGTTCAAGGAGGAAATGGAGGTGGCGGGGAAGTTGGAGAAGGTGCAGAAGGCGCTCGAGGGCGCTGTCAATGATTTGGAGTTGATGGGGAGGCTCTTGGATGAGTTTGATTTGCTTCAGCGGAGGGCGCAGTCTGTGGACTTGGACGCGGTTGACGCGAAGATAAGTAAGTTGATGCCTGAACTTGGTTTTGCTCCTGAGGATTCTGATAGGTTGGTCGCTTCTTTCAGTGGAGGGTGGCAGATGAGGATGTGTCTCGGCAAGATTCTACTTCAGGCACCTGATTTGTTGCTGTTAGATGAACCTACAAATCACCTTGATCTCGACACCATTGAGTGGCTTGAGGACTATCTTAACCAGCAGGATGTGCCGATGGTTATCATTTCACATGACAGAGCTTTTCTTGATCAGCTGTGTACCAAAATTGTGGAAACTGACATGGGTGTGTCCAGGACTTTTGAAGGAAATTATTCTCAATATGTAGTTTCAAAAGCAGCGTGGATTGAAGCACAGTATGCTGCGTGGGAGAAGCAGCAGAAAGAAATTGGGCAGACAAAAGACTTGATAAATAGATTAGGTGCTGGAGCAAACTCTGGCCGGGCTTCATCTGCTGAGAAGAAGCTGGAGAGACTTCAGGAAGAGGAATTAGTGGAGAAGCCATTTGAAcgaaaacaaatgaaaatcaGGTTCCCTGAGCGTGGAAGGAGTGGAAGATCTGTTGTAACAATTAAGAACTTGGAATTTGGCTTTGAGGATAAGACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACCTTACTGAAATTGATTATGGGTTTGGAAAAGCCAACTGGAGGTGATGTTTTGCTTGGGGAGCATAATGTATTACCTAACTATTTTGAGCAGAATCAGGCTGAGGCACTTGATCTGGACAAGACAGTGCTTGAGACAGTAGAGGAAGCTGCAGAGGACTGGAGGATTGATGATATTAAAGGGCTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGACCGAAAAGTTTCACTATTGAGTGGTGGGGAGAAGGCACGACTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTGCTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAACTGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGATACTTTATAAAGCAAATAGTTAATAGAGTGATAGAAATTAAAGATGGCACTATACAGGATTATGCAGGTGATTACAATTATTATTTAGAGAAGAATCTTGATGCTAGGGAAAGAGAACTTGAACGTGAGGCAGAGCTCGATAGCAAAGCTCCTAAAGTGAAAGCCAAATCTAAGATGTCAAAGGCTGAGAAAGAAGCACGGAAGAAGCAAAAGATGCAGGCCTTTCAGGCTGCAAAACAAAAGTCTAAAGGCGTGAAAAATGCGAAGAGATGGAATTGA 2100 0.4738 MDLAAKLHHLDLTGAVILDARKPSVLRHLPPRALPRANANTNTNLIYTNRFSGPLRPNSTSPSGLSTVTVDDDIESLFSSDPSSVDERRVKKQPSPGASGVSSGVKLENVGKTYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEESDSGNVIKAKANMRIAFLNQEFEVSPSRTVREEFTSAFKEEMEVAGKLEKVQKALEGAVNDLELMGRLLDEFDLLQRRAQSVDLDAVDAKISKLMPELGFAPEDSDRLVASFSGGWQMRMCLGKILLQAPDLLLLDEPTNHLDLDTIEWLEDYLNQQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVVSKAAWIEAQYAAWEKQQKEIGQTKDLINRLGAGANSGRASSAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRSVVTIKNLEFGFEDKTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPTGGDVLLGEHNVLPNYFEQNQAEALDLDKTVLETVEEAAEDWRIDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAITEYQGTVITVSHDRYFIKQIVNRVIEIKDGTIQDYAGDYNYYLEKNLDARERELEREAELDSKAPKVKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGVKNAKRWN 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2622 699 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 105 363 IPR003439 GO:0005524
Ssu1g2622 699 Coils Coil 659 688 - -
Ssu1g2622 699 CDD ABCF_EF-3 105 335 - -
Ssu1g2622 699 Pfam ABC transporter 334 421 IPR032781 -
Ssu1g2622 699 MobiDBLite consensus disorder prediction 48 81 - -
Ssu1g2622 699 PANTHER ABC TRANSPORTER F FAMILY MEMBER 5 47 689 - -
Ssu1g2622 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 351 IPR027417 -
Ssu1g2622 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 637 IPR027417 -
Ssu1g2622 699 CDD ABCF_EF-3 432 624 - -
Ssu1g2622 699 MobiDBLite consensus disorder prediction 48 104 - -
Ssu1g2622 699 Gene3D - 102 387 IPR027417 -
Ssu1g2622 699 Pfam ABC transporter 448 579 IPR003439 GO:0005524
Ssu1g2622 699 SMART AAA_5 129 344 IPR003593 -
Ssu1g2622 699 SMART AAA_5 456 624 IPR003593 -
Ssu1g2622 699 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 47 689 - -
Ssu1g2622 699 Gene3D - 394 662 IPR027417 -
Ssu1g2622 699 ProSitePatterns ABC transporters family signature. 267 281 IPR017871 GO:0005524
Ssu1g2622 699 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 432 647 IPR003439 GO:0005524
Ssu1g2622 699 MobiDBLite consensus disorder prediction 649 679 - -
Ssu1g2622 699 Pfam ABC transporter 120 295 IPR003439 GO:0005524
Ssu1g2622 699 ProSitePatterns ABC transporters family signature. 551 565 IPR017871 GO:0005524
Ssu1g2622 699 MobiDBLite consensus disorder prediction 649 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2622 Ssu-Chr1 71529335 71534740 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2622 429 649 Calmodulin-binding Proteins AT2G36910 25.911 6.41e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2622 - - gmx:100796907 1193.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2622 1 71529335 71534740 Ssu1g2622 1 71529335 71534740 ECH