Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2620 atgtaCTGGTGGCATGCTTTAGTCCTAGAAGTGATAATAGGCCAAAGTCTCTTGGTCTTGGCAATATCTTTCATCACTGACGCATCTATCACCACAATGGATTACTATTTTGGAAACCCTAATCCTAACCCTTATTACCGTCACTCTGCCGTAGCAAACATGGAATCTCCCTCCTCCGAGTTCATGTTATCTGATTATCTCATGTTGGAAGATGCTGTTGATCATCAAGAGTCTTGGTCACAAAGCACAGAAACTGAATCATCGGAGAAAGCAACCTCCAGCGATGCAAGTCATGGATTTGGTGATGcaacctccaccaccaccaccaacatAAAGTGCGAAAATAATGGGATTAAGCGAAAGAAGGCAGAAGTGGCTCAAAGGATCACGTTTAGAACCAGATCGCACCTTGAGGTTATGGATGATGGATATAAATGGAGGAAATACGGAAAGAAGTCAGTGAAGAACAGTCCCAACCCAAGGAACTACTACAAGTGCTCAGGTGAAGGATGCTATGTGAAGAAAAGGGTGGAAAGGGATAGGGATGACTCGAACTATGTGTTAACAACGTATGAAGGTGTCCACAATCATGAGAGCCCGTGTACCGCCTACTACAGCCAAATGTCCTTGGTGCATTCTAATAATTGGGCGCTGCAACCTTCTGCAAACTCGTCCTCTATGTAG 684 0.4225 MYWWHALVLEVIIGQSLLVLAISFITDASITTMDYYFGNPNPNPYYRHSAVANMESPSSEFMLSDYLMLEDAVDHQESWSQSTETESSEKATSSDASHGFGDATSTTTTNIKCENNGIKRKKAEVAQRITFRTRSHLEVMDDGYKWRKYGKKSVKNSPNPRNYYKCSGEGCYVKKRVERDRDDSNYVLTTYEGVHNHESPCTAYYSQMSLVHSNNWALQPSANSSSM 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2620 227 Pfam WRKY DNA -binding domain 141 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2620 227 SUPERFAMILY WRKY DNA-binding domain 133 200 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g2620 227 SMART WRKY_cls 140 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2620 227 ProSiteProfiles WRKY domain profile. 135 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2620 227 Gene3D WRKY domain 127 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g2620 227 MobiDBLite consensus disorder prediction 78 108 - -
Ssu1g2620 227 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 40 205 IPR044810 GO:0003700
Ssu1g2620 227 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 40 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2620 Ssu-Chr1 71514329 71517451 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2620 39 216 WRKY Transcription Factor Family AT5G64810 45.405 4.85e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu1g2620 WRKY 1.4e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2620 - - gmx:100127396 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2620 1 71514329 71517451 Ssu1g2620 1 71514329 71517451 ECH
Ssu5g0587 5 13236071 13241766 Ssu1g2620 1 71514329 71517451 PCT