Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2617 ATGATGTCGTCCCAAACTAATGTTAACCATAGCTTGTTTGAAGAGCAGGATCAGATCCCTACGCAGATGGGGTTCATTCCTTTCCCACCAAACCAGGCCTTTCCTCCTTTGGGTTGCCACCAATCTTTGAAACCCATCAGTGCAATGGTTCCTTCACTTTCATCTGAAACTGCTGCTTCTGCTGCAAATTTTGCTGAAACCCTACTCTCAACCGCTCTTCAAAGACCACGAGAAGATCTCACTTCAAGCTtgggaggaggaggaggaggaggccAACTCCTTTCCTTGAACAGATCGAGAGTGAATTCATGGGCATGGGAAGAAGTAACCGGTTGCTTGATGGGTAAAAGAATTGGAGGAGATGATAATCATCATCTAGGGGTTTCTGCCATGAAGATGAAGAAAATCAAGGCAAGGAGAAAGGTGAGGGAGCCAAGGTTTTGCTTCAAGACTATGAGCGATGTGGATGTGTTGGATGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAGCACCCAAGAAGCTACTACCGTTGCACCCAAGATAACTGTAGAGTAAAGAAACGCGTGGAGCGCTTGGCTGAGGATCCAAGAATGGTGATAACCACATATGAAGGGAGACATGTGCACTCGCCATCAAATGAACTTGAAGACTCACAAACTCCTTCTGAACTTAGTAATTTCTTGTGGTAG 708 0.4364 MMSSQTNVNHSLFEEQDQIPTQMGFIPFPPNQAFPPLGCHQSLKPISAMVPSLSSETAASAANFAETLLSTALQRPREDLTSSLGGGGGGGQLLSLNRSRVNSWAWEEVTGCLMGKRIGGDDNHHLGVSAMKMKKIKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNELEDSQTPSELSNFLW 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2617 235 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 59 226 IPR044810 GO:0003700
Ssu1g2617 235 Gene3D WRKY domain 145 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g2617 235 MobiDBLite consensus disorder prediction 220 235 - -
Ssu1g2617 235 ProSiteProfiles WRKY domain profile. 153 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2617 235 SMART WRKY_cls 158 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2617 235 MobiDBLite consensus disorder prediction 214 235 - -
Ssu1g2617 235 SUPERFAMILY WRKY DNA-binding domain 150 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g2617 235 Pfam WRKY DNA -binding domain 159 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2617 235 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 59 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2617 Ssu-Chr1 71458305 71461281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2617 62 235 WRKY Transcription Factor Family AT4G39410 52.941 7.63e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu1g2617 WRKY 1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2617 - - gmx:100127389 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2617 1 71458305 71461281 Ssu1g2617 1 71458305 71461281 ECH