Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2616 ATGAAAGCCCTGTACAGAAGCTCTCTCTTGCTCCTCTTCTCCCTCACCGTCCTCTCTCTTTCTCGAGCTTCCTCTTCGGTTCCGAGCAAAGACCCGACCCAGCAACTCATAAGCTTCAAAGCCTCTCTCCCGAACCAGTCCCTCCTCCCGAACTGGCTCCCGAACCAAAGCCCCTGTTCATTCACCGGTATCACCTGCAACCAGACCCACCTCACTTCCATAGACCTCACTGGTATCCCTCTCAGCACAAACCTCACCCTCGTCGCCACCTACCTCCTCACCCTCGACCACCTCCAGTCACTCTCCCTCAAATCCACCAACCTCACCGGTCCCGCTTCCATTCCTCTCTCCTCCCATTCCAAGTGCGCGTCCTCATTGTACGCCATAGATCTGTCCCAAAACACCCTCTCCGGTTCCCTCTCGGACATGTCGTTTCTGTCCTCGTGTTCCAACCTTCAAGCCCTCAACCTCTCCAACAACCTCCTCGAGTTCGATTCCCCTCACTGGAGGCTCAACCTCCGCGTCGCGGACCTCTCTTACAACAAGATTTCCGGCCCCGGCGTCCTCCCGTGGCTCCTCAGCCCCGACCTCGAACATCTCGCCCTCAAAGGGAACAAAATCACCGGCGAAACCGACCTCTCCGGTTCCGCTTCTCTCCAGTACCTGGACCTCTCCTCCAACAACTTCTCCGTCGCGATTCCTTCCTTCGGCGAGTGCTCCTCGCTGGAATACCTGGACCTCTCCGCCAACAAGTACGTCGGCGACATTGCCCGCACTCTCTCCCCTTGCACCCGCCTCGTGTACCTCAACGTCTCCAGCAACCAGTTCTCCGGTCCGGTTCCCTCCCTCCCCTCCGGTTCCCTCCAGTTCGTCTACCTCGCCGCCAACCACTTCCGCGGCCAGATTCCGCCGGCTCTCGCCGACCTCTGCTCCACTCTCGTCAACCTCGATCTCTCGTCCAACAACCTCACGGGCGCCCTCCCCGGCGCGTTCGGCGCGTGCGCTTCGTTACAGTCCTTCGACATTTCCGGCAACCTCTTCACCGGCGCGTTGCCGATGGAGGTGTTCATGAGAATGAGCAGCCTGAGGGAGCTCGCGGTGGCGTTCAACGGGTTCGTTGGTCCTTTCCCCGAGTCGGTGTCGAAGCTGGCGACTCTGGAGTCGCTGGATCTGAGTTCCAACAACTTCAGCGGGCCTATCCCTGGAACGCTGTGCGGAGGAGATGCGAGGAATAATTTGAAGGAACTGTACCTGCAGAACAACCGCTTCACGGGTTTTATTCCGCCCACGCTCAGCAACTGTTCCAACCTCGTCGCCTTGGACCTGAGCTTCAACTTCCTCTCGGGGACTATCCCTCCCAGCTTGGGCTCTCTCTCGAAGCTCAAAGACTTAATCATCTGGCTCAACCAGCTCCACGGGGAGATACCGCAGGAGCTGATGCACCTCAAGAGCCTCGAGAATTTGATCCTGGATTTCAACGACTTGACAGGGAACATTCCCTCCGGACTCGTGAACTGCACCAAGCTGAATTGGATCTCCCTATCCAACAACAGGCTCACCGGCGAGATTCCCGCGTGGATTGGGAAGCTCTCCAATCTGGCCATACTCAAGCTCAGTAATAACTCCTTCTCCGGCCGGATTCCGCCGGAGCTCGGGGATTGTACTAGCTTGATATGGTTGGATCTGAACACCAATTCCCTCACTGGGCCCATTCCGCCGGAGTTGTTCAAGCAGTCGGGGAAGATCGCCGTGAATTTCATCAGCGGGAAGACGTATGTGTACATAAAGAACGATGGGAGTAAGGAGTGTCACGGGGCGGGGAACTTGCTGGAGTTCGCGGGGATCAGTCAGCAGCAGCTGAACAGGATTTCGACGAGGAACCCCTGCAATTTCACGAGGGTTTATGGAGGTAAGTTGCAGCCAACGTTTAACCATAATGGTTCTATGATCTTTTTGGATATCTCGCACAACATGTTGTCAGGGAGTATTCCCAAGGAGATTGGGGAGATGTACTATCTGTACATTCTCAATTTGGGCCACAATAATGTATCTGGAGGCATTCCTCAAGAGCTAGGGAAGATGAAGAATCTCAACATCCTTGATCTCTCGAACAATAGACTGGGAGGGCAAATTCCGCAGAGCCTGACTGGACTTTCCTTGCTCACTGAGATCGACTTGTCGAACAACTTCCTCTCGGGGCTGATTCCTGAGTCGGGTCAATTTGATACCTTCCCCGCGGCGAGGTTTCAGAACAACTCTGGTCTCTGTGGAGTTCCTCTGACCCCGTGTGGGACGGACTCGGCGAACAGCGCGAGTGCCGAACATATGAAGTCTCACAGGAGGCAGGCTTCTCTGGCGGGGAGTGTGGCCATGGGGTTGCTCTTCTCCCTCTTCTGCGTCTTAGGTTTGTTCATACTTGCCATTGAGAccagaaagaggaggaagaagaaggaagcTGCTCTTGAGCTCTACGTGGATGGTAATTCGAATTCGGGTCCCGCCAACGGGAGCTGGAAGAACACCAATACCCGGGAAGCGCTTAGCATAAACCTTGCGACGTTCGAGAATCCCCTAATGAATCTTACCTTCGCGGACCTTCTGAACGCTACCAATGGCTTCCACAACGACAGTCTCATCGGCTCTGGCGGGTTCGGGGACGTGTACAAGGCTCGGTTGAAGGACGGAAGTGTTGTGGCCATCAAGAAGCTGATTCATGTCAGCGGACAAGGGGACAGGGAGTTCACTGCTGAAATGGAGACCATTGGGAAAATCAAGCACAGGAACCTTGTTCCCCTGCTGGGGTACTGCAAGGTTGGGGAAGAGAGGCTCTTGGTTTATGAGTACATGAGATATGGAAGCTTAGAGGATGTTCTGCATGATCAGAAGAAAGCTGGGATTAGACTCAGCTGGGCGGTGAGGAGGAAAATTGCAATTGGGGCTGCCAGGGGATTGGCTTTTCTTCACCACAATTGTAACCCTCACATCATCCATAGAGACATGAAGTCAAGCAATGTGTTGCTTGATGAAAAGCTGGAGGCCAGGGTCTCTGATTTTGGAATGGCTAGGCTTATGAGTGCTATGGATACACATTTGAGTGTGAGCACGCTGGCGGGCACCCCGGGGTATGTTCCTCCTGAGTACTATCAGAGCTTCAGATGCTCCACTAAAGGTGATGTCTACAGTTATGGTGTGGTTTTGCTGGAGCTGCTAACTGGGAAGAGGCCAACGGACTCGGCTGATTTTGGTGATAATAATCTTGTTGGGTGGGTTAAACAACATGCCAAGCTGAAGATAAGTGATATTTTTGACCCGGAGCTCATGAAGGAGGATCCCAATCTGGAGATAGAGCTTTTGCAGCACCTGAAGGTTGCCTGTTCCTGTTTGGATGACAGACCATGGCGGCGTCCGACGATGATTCAAGTGATGGCAATGTTCAAGGAGATTCAGGCGGGATCCGGGATCGATTCTCAGTCAACCATAGCCAACGAAGAGGAAGGCTTCAATGCGGTTGAGATGGTGGAGATGAGCATTAAAGAAGACCCTGAATTGAGCAAGCATTAG 3561 0.5358 MKALYRSSLLLLFSLTVLSLSRASSSVPSKDPTQQLISFKASLPNQSLLPNWLPNQSPCSFTGITCNQTHLTSIDLTGIPLSTNLTLVATYLLTLDHLQSLSLKSTNLTGPASIPLSSHSKCASSLYAIDLSQNTLSGSLSDMSFLSSCSNLQALNLSNNLLEFDSPHWRLNLRVADLSYNKISGPGVLPWLLSPDLEHLALKGNKITGETDLSGSASLQYLDLSSNNFSVAIPSFGECSSLEYLDLSANKYVGDIARTLSPCTRLVYLNVSSNQFSGPVPSLPSGSLQFVYLAANHFRGQIPPALADLCSTLVNLDLSSNNLTGALPGAFGACASLQSFDISGNLFTGALPMEVFMRMSSLRELAVAFNGFVGPFPESVSKLATLESLDLSSNNFSGPIPGTLCGGDARNNLKELYLQNNRFTGFIPPTLSNCSNLVALDLSFNFLSGTIPPSLGSLSKLKDLIIWLNQLHGEIPQELMHLKSLENLILDFNDLTGNIPSGLVNCTKLNWISLSNNRLTGEIPAWIGKLSNLAILKLSNNSFSGRIPPELGDCTSLIWLDLNTNSLTGPIPPELFKQSGKIAVNFISGKTYVYIKNDGSKECHGAGNLLEFAGISQQQLNRISTRNPCNFTRVYGGKLQPTFNHNGSMIFLDISHNMLSGSIPKEIGEMYYLYILNLGHNNVSGGIPQELGKMKNLNILDLSNNRLGGQIPQSLTGLSLLTEIDLSNNFLSGLIPESGQFDTFPAARFQNNSGLCGVPLTPCGTDSANSASAEHMKSHRRQASLAGSVAMGLLFSLFCVLGLFILAIETRKRRKKKEAALELYVDGNSNSGPANGSWKNTNTREALSINLATFENPLMNLTFADLLNATNGFHNDSLIGSGGFGDVYKARLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMRYGSLEDVLHDQKKAGIRLSWAVRRKIAIGAARGLAFLHHNCNPHIIHRDMKSSNVLLDEKLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDIFDPELMKEDPNLEIELLQHLKVACSCLDDRPWRRPTMIQVMAMFKEIQAGSGIDSQSTIANEEEGFNAVEMVEMSIKEDPELSKH 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2616 1186 Gene3D Ribonuclease Inhibitor 36 763 IPR032675 -
Ssu1g2616 1186 PANTHER SYSTEMIN RECEPTOR SR160 8 1160 - -
Ssu1g2616 1186 PRINTS Leucine-rich repeat signature 313 326 - -
Ssu1g2616 1186 PRINTS Leucine-rich repeat signature 694 707 - -
Ssu1g2616 1186 SUPERFAMILY Protein kinase-like (PK-like) 854 1145 IPR011009 -
Ssu1g2616 1186 ProSitePatterns Serine/Threonine protein kinases active-site signature. 995 1007 IPR008271 GO:0004672|GO:0006468
Ssu1g2616 1186 SMART LRR_typ_2 530 554 IPR003591 -
Ssu1g2616 1186 SMART LRR_typ_2 383 407 IPR003591 -
Ssu1g2616 1186 SMART LRR_typ_2 309 333 IPR003591 -
Ssu1g2616 1186 SMART LRR_typ_2 555 578 IPR003591 -
Ssu1g2616 1186 SMART LRR_typ_2 718 741 IPR003591 -
Ssu1g2616 1186 SMART LRR_typ_2 412 434 IPR003591 -
Ssu1g2616 1186 SMART LRR_typ_2 694 717 IPR003591 -
Ssu1g2616 1186 SMART LRR_typ_2 482 506 IPR003591 -
Ssu1g2616 1186 SUPERFAMILY L domain-like 641 764 - -
Ssu1g2616 1186 Gene3D Transferase(Phosphotransferase) domain 1 949 1150 - -
Ssu1g2616 1186 Pfam Protein kinase domain 873 1143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2616 1186 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 1160 - -
Ssu1g2616 1186 Pfam Leucine rich repeat N-terminal domain 33 67 IPR013210 -
Ssu1g2616 1186 Gene3D Phosphorylase Kinase; domain 1 834 948 - -
Ssu1g2616 1186 Pfam Brassinosteroid receptor island domain 580 644 IPR045381 -
Ssu1g2616 1186 CDD STKc_IRAK 879 1148 - -
Ssu1g2616 1186 Pfam Leucine rich repeat 508 567 IPR001611 GO:0005515
Ssu1g2616 1186 Pfam Leucine rich repeat 673 729 IPR001611 GO:0005515
Ssu1g2616 1186 Pfam Leucine rich repeat 312 370 IPR001611 GO:0005515
Ssu1g2616 1186 Gene3D - 585 645 - -
Ssu1g2616 1186 Pfam Leucine Rich repeats (2 copies) 218 256 IPR025875 -
Ssu1g2616 1186 Pfam Leucine Rich repeat 384 398 IPR001611 GO:0005515
Ssu1g2616 1186 ProSitePatterns Protein kinases ATP-binding region signature. 879 902 IPR017441 GO:0005524
Ssu1g2616 1186 SUPERFAMILY RNI-like 260 573 - -
Ssu1g2616 1186 SUPERFAMILY L domain-like 36 282 - -
Ssu1g2616 1186 Pfam Leucine Rich Repeat 412 434 IPR001611 GO:0005515
Ssu1g2616 1186 Pfam Leucine Rich Repeat 436 458 IPR001611 GO:0005515
Ssu1g2616 1186 SMART serkin_6 873 1145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2616 1186 ProSiteProfiles Protein kinase domain profile. 873 1148 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2616 Ssu-Chr1 71412747 71416307 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2616 22 1182 Receptor kinase-like Gene Family AT4G39400 68.027 0.0 1536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Ssu1g2616 Pkinase 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2616 K13415 - gmx:100799772 2027.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2616 1 71412747 71416307 Ssu1g2616 1 71412747 71416307 ECH